PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g02780.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 359aa    MW: 37949.4 Da    PI: 12.0408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g02780.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19175225155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++aa++ ++g
  Zjn_sc00023.1.g02780.1.am.mk 175 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 225
                                   689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.38E-17175235No hitNo description
PfamPF008474.4E-13175225IPR001471AP2/ERF domain
SMARTSM003805.0E-35176239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31176234IPR001471AP2/ERF domain
PROSITE profilePS5103224.54176233IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21176234IPR016177DNA-binding domain
PRINTSPR003673.3E-10177188IPR001471AP2/ERF domain
PRINTSPR003673.3E-10199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGAGRPRRAL HGVLLKQYPN PVAGPRALPP PCQGGTQGRR GTGARQERRT PPPRRARVRT  60
GRPRRGGDGG VTRRAAVARA SGSCGVFTGF VRWARTVERG RKATCLEVAG GGRRAVWVRD  120
QTTTERARTL GARQRPASSV ATWWSRSLFP SFVASMAPKT APPPAAAVSD GMMEPRFRGV  180
RKRPWGRYAA EIRDPARKAR VWLGTFDTAE AAARAYDAAA LHFRGPKAKT NFPVAYAQAK  240
HALAPPKALA VSPSSSTIES SSRESPVAAP APASSLDLSL GMPVVVAAQP FMFLDPRLAV  300
TVAVPAPAPL RPVAVAAHKA ATYRDDEQSD TGSSSSVVDA SPAVGLGLDL NMPPPDEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19171236975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933877e-72FP093387.1 Phyllostachys edulis cDNA clone: bphylf043h08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823499.13e-80ethylene-responsive transcription factor 4-like
TrEMBLA0A2T8IDR91e-79A0A2T8IDR9_9POAL; Uncharacterized protein
STRINGPavir.Ga00485.1.p3e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-20ethylene response factor 7