PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g02100.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 756aa MW: 82992.5 Da PI: 10.1376

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g02100.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.4	2.7e-12	715	739	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWtp+LHerFv+av++LGG++ Zjn_sc00023.1.g02100.1.am.mk 715 KPRLRWTPDLHERFVDAVTKLGGPD 739 79*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50998	1.26E-56	148	447	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
CDD	cd00200	1.03E-38	162	445	No hit	No description
PROSITE profile	PS50294	30.743	165	454	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	1.0E-59	165	449	IPR015943	WD40/YVTN repeat-like-containing domain
SMART	SM00320	2.6E-5	183	222	IPR001680	WD40 repeat
Pfam	PF12894	8.7E-6	189	247	IPR024977	Anaphase-promoting complex subunit 4, WD40 domain
PROSITE profile	PS50082	12.012	190	231	IPR001680	WD40 repeat
SMART	SM00320	11	225	263	IPR001680	WD40 repeat
SMART	SM00320	1.2E-9	267	306	IPR001680	WD40 repeat
Pfam	PF00400	2.9E-7	271	306	IPR001680	WD40 repeat
PROSITE profile	PS50082	15.154	274	315	IPR001680	WD40 repeat
PROSITE pattern	PS00678	0	293	307	IPR019775	WD40 repeat, conserved site
SMART	SM00320	0.0029	318	360	IPR001680	WD40 repeat
Pfam	PF00400	0.028	322	360	IPR001680	WD40 repeat
PROSITE pattern	PS00678	0	347	361	IPR019775	WD40 repeat, conserved site
SMART	SM00320	410	363	403	IPR001680	WD40 repeat
SMART	SM00320	5.4E-5	406	445	IPR001680	WD40 repeat
Pfam	PF00400	0.049	412	445	IPR001680	WD40 repeat
PROSITE profile	PS50082	12.681	413	446	IPR001680	WD40 repeat
Gene3D	G3DSA:1.10.10.60	1.2E-10	712	740	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-7	715	740	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MDPGSKSISS QKSSRRMAPR PPLQEAGSRP YMPSLCSGPR NPSAKCYGDR FIPDRSAMDM 60 DMAHYLLTEP KKGKENPAAS PAKEAYRKLL AEKLLNNRTR ILAFRNKPPE PDNILADLRA 120 DAASFQAKPV KQRRHIPQSA DRTLDAPELV DDYYLNLLDW GSNNVLSIAL GNTVYLWDAN 180 SGSTSELVTI DEDNGPVTSV SWAPDGRHIA VGLNSSDIQL WDSTSNRLLR TMRGVHEWRV 240 GSLAWNNHIL TTGGMDGKIV NNDVRIRNHV VHTYRGHEQE VCGLKWSGSG QQLASGGNDN 300 LLHIWDVSMA SSVQSAGRTQ WLHRLPDHLA AVKALAWCPF QSNLLASGGG GGDRCIKFWN 360 THTGACLNSV DTGSQVCALL WNKNERELLS SHGFTQNQLT LWKYPSMVKM ADLNGHTSRV 420 LFMAQSPDGY TVASAAADET LRFWSVFGTP EPTPKASKAS SYTGIFNTSG AAVSTQQVAR 480 GNSWREYSSA ISAEHFAHWH RGGTSPGCRV ARDLPNNTVL VGSSFRRGGK PMCDFAACAV 540 FSLSVRQAST QPPNAARDTS TVRGVRTQPS SCCPKERRRE IPHTHDALHL LRRSLRWSAL 600 QLLSPPPFSF LSSLHTYIRL RSHCTRTAHA DRPPRLSTGA SGQRNIPCVG LQQEPVRSSH 660 STGEGLRGRR RGDRRGEVGA RVQLSSARWL TSCRGGKGMQ GTYGGGMGAL SRDPKPRLRW 720 TPDLHERFVD AVTKLGGPDS LAQLVSHCKS DHRALC

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MDPGSKSISS QKSSRRMAPR PPLQEAGSRP YMPSLCSGPR NPSAKCYGDR FIPDRSAMDM  60
DMAHYLLTEP KKGKENPAAS PAKEAYRKLL AEKLLNNRTR ILAFRNKPPE PDNILADLRA  120
DAASFQAKPV KQRRHIPQSA DRTLDAPELV DDYYLNLLDW GSNNVLSIAL GNTVYLWDAN  180
SGSTSELVTI DEDNGPVTSV SWAPDGRHIA VGLNSSDIQL WDSTSNRLLR TMRGVHEWRV  240
GSLAWNNHIL TTGGMDGKIV NNDVRIRNHV VHTYRGHEQE VCGLKWSGSG QQLASGGNDN  300
LLHIWDVSMA SSVQSAGRTQ WLHRLPDHLA AVKALAWCPF QSNLLASGGG GGDRCIKFWN  360
THTGACLNSV DTGSQVCALL WNKNERELLS SHGFTQNQLT LWKYPSMVKM ADLNGHTSRV  420
LFMAQSPDGY TVASAAADET LRFWSVFGTP EPTPKASKAS SYTGIFNTSG AAVSTQQVAR  480
GNSWREYSSA ISAEHFAHWH RGGTSPGCRV ARDLPNNTVL VGSSFRRGGK PMCDFAACAV  540
FSLSVRQAST QPPNAARDTS TVRGVRTQPS SCCPKERRRE IPHTHDALHL LRRSLRWSAL  600
QLLSPPPFSF LSSLHTYIRL RSHCTRTAHA DRPPRLSTGA SGQRNIPCVG LQQEPVRSSH  660
STGEGLRGRR RGDRRGEVGA RVQLSSARWL TSCRGGKGMQ GTYGGGMGAL SRDPKPRLRW  720
TPDLHERFVD AVTKLGGPDS LAQLVSHCKS DHRALC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ggd_A	1e-122	48	447	8	405	Cell division cycle protein 20 homolog
4ggd_B	1e-122	48	447	8	405	Cell division cycle protein 20 homolog
5g04_R	1e-121	48	447	76	473	CELL DIVISION CYCLE PROTEIN 20 HOMOLOG
5khr_R	1e-121	48	447	76	473	Cell division cycle protein 20 homolog
5khu_R	1e-121	48	447	76	473	Cell division cycle protein 20 homolog
5khu_S	1e-121	48	447	76	473	Cell division cycle protein 20 homolog
5lcw_R	1e-121	48	447	76	473	Cell division cycle protein 20 homolog
6f0x_Q	1e-121	48	447	76	473	Cell division cycle protein 20 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. {ECO:0000250, ECO:0000269\|PubMed:21687678}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression starts to rise in the S-phase and peaks in the M-phase with a non-negligible basic expression level also in the other cell cycle phases. {ECO:0000269\|PubMed:21687678}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691685.1	0.0	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like
Swissprot	Q9SZA4	0.0	CDC21_ARATH; Cell division cycle 20.1, cofactor of APC complex
TrEMBL	J3M118	0.0	J3M118_ORYBR; Uncharacterized protein
STRING	OB04G30930.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1329	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-11	G2-like family protein

Publications ? help Back to Top
Capron A,Okrész L,Genschik P First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase. Trends Plant Sci., 2003. 8(2): p. 83-9 [PMID:12597875] Pérez-Pérez JM, et al. Specialization of CDC27 function in the Arabidopsis thaliana anaphase-promoting complex (APC/C). Plant J., 2008. 53(1): p. 78-89 [PMID:17944809] Lima Mde F, et al. Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants. BMC Plant Biol., 2010. 10: p. 254 [PMID:21087491] Kevei Z, et al. Conserved CDC20 cell cycle functions are carried out by two of the five isoforms in Arabidopsis thaliana. PLoS ONE, 2011. 6(6): p. e20618 [PMID:21687678] Cromer L, et al. OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM. PLoS Genet., 2012. 8(7): p. e1002865 [PMID:22844260] Iwata E, et al. Roles of GIG1 and UVI4 in genome duplication in Arabidopsis thaliana. Plant Signal Behav, 2012. 7(9): p. 1079-81 [PMID:22899078] Cromer L, et al. Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis. Curr. Biol., 2013. 23(21): p. 2090-9 [PMID:24206843] Niu B, et al. Arabidopsis Cell Division Cycle 20.1 Is Required for Normal Meiotic Spindle Assembly and Chromosome Segregation. Plant Cell, 2015. 27(12): p. 3367-82 [PMID:26672070]