PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g07750.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 654aa    MW: 70649.9 Da    PI: 10.0094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g07750.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-19407457256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p +   r+r +lg+f+tae+Aa a+++ + kl+ge
  Zjn_sc00022.1.g07750.1.am.mk 407 LYRGVRQRH-WGKWVAEIRLPQN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 457
                                   59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.79E-30406466No hitNo description
PROSITE profilePS5103222.932407464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32407465IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23407465IPR016177DNA-binding domain
SMARTSM003806.1E-39407470IPR001471AP2/ERF domain
PRINTSPR003671.5E-10408419IPR001471AP2/ERF domain
PfamPF008475.8E-12408457IPR001471AP2/ERF domain
PRINTSPR003671.5E-10430446IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MPARNTCLNK NKTGRDFFAP GVLSCEEQWR LERKESNREG IKSSVYGFVL DRCRPARATA  60
GQQSKENAHR KPRDACRTPF APARIAASVC HAESGAEGVN ARGARAADHD PFPPHNDARL  120
FFVVSSVERL HALTARPIGS QRHSEHRSPA WQRLARSRPV PRARAAACSS MQFASGGRPG  180
DRHTHSSQLG ESVGMDAADR GGGRGRGRKW KGKAVSAAGP ERPRLAPVLE DAPAATFLRP  240
LKKPRSPDQL RRSVSSLSSA PASPDSSSVS NPLSPPATSW PPTRHVFPFA YDPAPAASPD  300
AAAGAGPRVL PLFQYSSAYQ QQPLPPQQQP PVQRQQMISF GGDNQQQQFG AASPLFPPQL  360
VAPEVQQQML LRYWSEALNL SPRGFRGGAV PPALFQHLLR AQAPPKLYRG VRQRHWGKWV  420
AEIRLPQNRT RLWLGTFDTA EDAAMAYDRE AFKLRGENAR LNFPDLFLGK GRVGGSGRTS  480
ASAAASCSSS SSSAPPTPDE IRAKQAQEHH GEEPASKNSE AKPQIPEAEQ AENSEPQQYS  540
QVQTADQQSG DCSTAMFQPP VTSSGVWGPA DEAWFSAWGP GSSVWDYDMD NAHAGLFLQS  600
RFASESTGLD FVSSAPDVAM TPAPAAGPAM AAASSPPRPP CPPLPHSPTY VWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19403464163ATERF1
3gcc_A1e-19403464163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809849.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2S3GRD60.0A0A2S3GRD6_9POAL; Uncharacterized protein
STRINGSi019997m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-37ERF family protein