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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00022.1.g07420.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
NAC |
| Protein Properties |
Length: 287aa MW: 32352.9 Da PI: 6.8423 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00022.1.g07420.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 102.3 | 6.7e-32 | 3 | 77 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk +++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
Zjn_sc00022.1.g07420.1.am.mk 3 EQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKLIYA-KNCLVGMRKTLVFYRGRAPNGHKSDWIMHEYRLE 77
578**************************************.999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MEEQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKL IYAKNCLVGM RKTLVFYRGR 60
APNGHKSDWI MHEYRLETSE NATAPEEGWV VCRVFKKRVA TVQRMSESPP CWFDDHSAGF 120
MPALGSPRQL LQHHRNTSAA YVGQHQPLYH CKPELEYHHL LPSQEAFLPQ LPQLESPNSK 180
PPVYIGHGSD SSLPSSEHSR YTPQQQTMAS ASYMAAVDDS ATDWSVLDKF VASQLFSHGD 240
STSKEPSYSS PVPAFPLTES NNQEETQDLV DYASTSVSGG GQADLWK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-31 | 4 | 98 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-31 | 4 | 98 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-31 | 4 | 98 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-31 | 4 | 98 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-31 | 4 | 98 | 70 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 5e-31 | 4 | 98 | 70 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075092 | 1e-134 | KT075092.1 Panicum virgatum secondary wall NAC master switch (SWN8A) mRNA, complete cds. |
| GenBank | KT075093 | 1e-134 | KT075093.1 Panicum virgatum secondary wall NAC master switch (SWN8B) mRNA, complete cds. |
