PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g07000.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 325aa    MW: 36271.6 Da    PI: 9.7261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g07000.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31249307159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vk+s +prsY+rCt+++C+vkk+ver ++d ++v++tYeg+H+h+
  Zjn_sc00022.1.g07000.1.am.mk 249 LDDGYKWRKYGQKVVKNSLHPRSYFRCTHSNCRVKKRVERLSTDCRMVITTYEGRHTHS 307
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32234307IPR003657WRKY domain
SuperFamilySSF1182901.26E-27241307IPR003657WRKY domain
PROSITE profilePS5081128.564244306IPR003657WRKY domain
SMARTSM007742.7E-37249308IPR003657WRKY domain
PfamPF031061.5E-24250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMCKEIKRNP SEKSRARAAR WKAKPAPIHP SRNTYQDGND LRIDWLPTCV LQRKYVYWKR  60
ASALSSIENE ERILKAHLLP QEPLCARSIN RFGAKMQAYM EGGQLGTCLP ASLVLPDSYA  120
FSFPSPPLQL PTLPKRLLQM PFDQGEAGNH GAMLASDQGG LHQLPALPFG CSGAAAVVSG  180
GKPTAGLMPS IEEVCTSVTK VGYEGATCNG SSTWWKSSAT MADRGKMKVR RKMREPRFCF  240
QTKSDVDVLD DGYKWRKYGQ KVVKNSLHPR SYFRCTHSNC RVKKRVERLS TDCRMVITTY  300
EGRHTHSPCS DDAASGDHTD CFSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24240306874Probable WRKY transcription factor 4
2lex_A2e-24240306874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586101e-136KU058610.1 UNVERIFIED: Panicum miliaceum WRKY22-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793222.11e-121probable WRKY transcription factor 12
TrEMBLA0A0A9DKW31e-129A0A0A9DKW3_ARUDO; Uncharacterized protein
STRINGPavir.Ab02456.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-62WRKY family protein