PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g06640.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 361aa    MW: 38666.4 Da    PI: 8.9987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g06640.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18121171155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + y+GVr+++ +g Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zjn_sc00022.1.g06640.1.am.mk 121 PSYRGVRRRS-WGVWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 171
                                   57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-13121171IPR001471AP2/ERF domain
CDDcd000187.05E-28121181No hitNo description
SuperFamilySSF541712.81E-20122180IPR016177DNA-binding domain
SMARTSM003803.1E-36122185IPR001471AP2/ERF domain
PROSITE profilePS5103223.512122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31122180IPR001471AP2/ERF domain
PRINTSPR003679.7E-10123134IPR001471AP2/ERF domain
PRINTSPR003679.7E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MARSTSARYL YQPGSAPLSA RYLPIRVLAA CLIATRAMES DAIHAPATTS SSSDSGSCVI  60
NGAQELSKNG KPSTKHLKRK RATCLPADPT GTGARVPEAV DDERYGEDGS SRAKGSAGRH  120
PSYRGVRRRS WGVWVSEIRE PRKKSRIWLG TFPTAEMAAR AHDVAALAIK GRAAHLNFPH  180
LAHELPRPAS TSPADIQAAA AAAAAAATDQ CGSSPAAEAA SSSSAACWEE TAAAGHGEEN  240
ALFDLPDLLL DLQNGLWSPP LWAAAEEYDT GDVASLQEPL LWTTDTGIPR DRFVWTNMTG  300
HARGVAVVYG WEVTSRCGEV KQAVLWLYGF KSRNEHLTPW RHVRAHNRPA GRRSPGPPVA  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18113180573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076622e-78AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050062e-78AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149582e-78AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452322e-78AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646010.12e-71ethylene-responsive transcription factor ERF038
TrEMBLA0A3L6EZ192e-73A0A3L6EZ19_MAIZE; Ethylene-responsive transcription factor ERF034
STRINGSi017995m5e-71(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-29ERF family protein