PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g06610.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 256aa    MW: 27320.1 Da    PI: 4.924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g06610.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1857105355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Zjn_sc00022.1.g06610.1.am.mk  57 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 105
                                   9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1355105IPR001471AP2/ERF domain
SMARTSM003801.1E-3756119IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2256113IPR016177DNA-binding domain
PROSITE profilePS5103223.30156113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3256114IPR001471AP2/ERF domain
CDDcd000181.67E-3157114No hitNo description
PRINTSPR003671.3E-105768IPR001471AP2/ERF domain
PRINTSPR003671.3E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGEERAMSPV SGASATCSHH GDFSSSSSGP GSPLASPESG AGSSRKRPRR ELKHPAYRGV  60
RMRAWGKWVS EIREPRKKSR IWLGTFDTPE MAARAHDVAA LAIKGRAARL NFPEMSHELP  120
RAASSAPEDV RAAAALAAAM QSAAPAASSD SSRGSAGCVE DDEATQSRTA ADASIDSTHS  180
ACNDENEEAT PAAPSSSRHG DCNNDDEEAT QLDSHVMDLA LFELPDVLRE FGFALPPLTP  240
CCDNFCWDEP LLLWQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18541131272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701807e-99EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315933.13e-86ethylene-responsive transcription factor ERF043
TrEMBLA0A194YS756e-85A0A194YS75_SORBI; Uncharacterized protein
STRINGGRMZM2G041839_P013e-83(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-40ERF family protein