PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g05790.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 414aa MW: 43187.3 Da PI: 9.17

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g05790.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.3e-39	141	201	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Zjn_sc00022.1.g05790.1.am.mkhc 141 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 201 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	137	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	145	199	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
ERRETERGEG AAIPQRPSTG HSSWLVHLLG TRPLAAPPLE LFVSLASWSY RKPQELLPIE 60 ERDWSPCMHG RGTLESGLVK PMEEMIMAGN PYPNQNRNPA PAAPSAPGPQ RAGGAPAAAP 120 AGASSGAAAG AGTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT 180 EGGSLRNVPV GGGSRKNKRS SASVSAAAAV ATSAAMVPVG LAAKNPKLMH EGAQDLNLAF 240 PHHNGRGLQP PEFAAFPSLE SSSVGAFSAL DLLRSTGCYV PLQHVQLGMP AEYESAGFAL 300 GELRMPPPPQ SQSMLGFSLD THGTGGVGGA GGYSAGLQDS AAAGRLLFPF EDLKPAVSAG 360 GGVANAGGDQ YKHNKDQGGD GRAASRVTGG HDTPGFWNNS MIGNGSSNGG GGPW

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

ERRETERGEG AAIPQRPSTG HSSWLVHLLG TRPLAAPPLE LFVSLASWSY RKPQELLPIE  60
ERDWSPCMHG RGTLESGLVK PMEEMIMAGN PYPNQNRNPA PAAPSAPGPQ RAGGAPAAAP  120
AGASSGAAAG AGTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT  180
EGGSLRNVPV GGGSRKNKRS SASVSAAAAV ATSAAMVPVG LAAKNPKLMH EGAQDLNLAF  240
PHHNGRGLQP PEFAAFPSLE SSSVGAFSAL DLLRSTGCYV PLQHVQLGMP AEYESAGFAL  300
GELRMPPPPQ SQSMLGFSLD THGTGGVGGA GGYSAGLQDS AAAGRLLFPF EDLKPAVSAG  360
GGVANAGGDQ YKHNKDQGGD GRAASRVTGG HDTPGFWNNS MIGNGSSNGG GGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582410	1e-131	KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826520.1	1e-141	dof zinc finger protein 2-like isoform X1
Refseq	XP_025826521.1	1e-141	dof zinc finger protein 2-like isoform X2
Swissprot	B9F1L8	1e-119	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A1E5VJZ3	1e-144	A0A1E5VJZ3_9POAL; Uncharacterized protein
STRING	Pavir.Aa00902.1.p	1e-142	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-49	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]