PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g05710.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 762aa    MW: 81394.5 Da    PI: 5.9054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g05710.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.93.2e-2292147156
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     r++ +++t++q++eLe+lF+++++p+ ++r eL+++lgL+ rqVk+WFqNrR+++k
  Zjn_sc00022.1.g05710.1.sm.mkhc  92 RKRYHRHTPQQIQELEALFKECPHPDDKQRGELSTRLGLDPRQVKFWFQNRRTQMK 147
                                     789999***********************************************999 PP
2START216.4e-08308388169
                                     HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCH.HHHHHHHHCC CS
                           START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmv.lallveelld 67 
                                     ela +a++elvk+a+ +ep+W +  ++ +++ +l  +e +++           + +ea+r+sg+v+ + +a lve+l+d
  Zjn_sc00022.1.g05710.1.sm.mkhc 308 ELAISAMDELVKMAQMDEPLWLTTISGAPNKATLNFVEYARSfvpclgmkpmgFVSEASRESGLVIINdSAALVETLMD 386
                                     57889********************88888888888877777788888****************98652679******* PP

                                     CG CS
                           START  68 dk 69 
                                     ++
  Zjn_sc00022.1.g05710.1.sm.mkhc 387 QM 388
                                     98 PP
3START131.78.4e-4238750693206
                                     EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEE CS
                           START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvt 165
                                     +m+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d     p+     +++ v++++lpSg++i++++ng++kvt
  Zjn_sc00022.1.g05710.1.sm.mkhc 387 QMKAELQVLSPLVPiREVTFLRFSKQLAEGAWAVVDVSIDGLIRGPNsattsTAGNVKCRRLPSGCVIQDTPNGYCKVT 465
                                     799*************************************87666665666799************************* PP

                                     EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                     wveh++++++++h+l+r+l +sgla+ga++w+atlqrqce+
  Zjn_sc00022.1.g05710.1.sm.mkhc 466 WVEHTEYDEASVHELYRPLFRSGLAFGARRWLATLQRQCES 506
                                     ***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-2174149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2377149IPR009057Homeodomain-like
PROSITE profilePS5007117.96189149IPR001356Homeobox domain
SMARTSM003897.4E-2190153IPR001356Homeobox domain
CDDcd000861.24E-1991149No hitNo description
PfamPF000469.8E-2092147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084832.493299509IPR002913START domain
SuperFamilySSF559612.89E-24301507No hitNo description
CDDcd088752.34E-92303505No hitNo description
SMARTSM002344.8E-25308506IPR002913START domain
PfamPF018525.3E-36387506IPR002913START domain
SuperFamilySSF559614.95E-19526728No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MNFGSFFNGG AGGGMQFPYS AGFSSSPALS LGRDNAGGVL SGGAGVGADG GAMGRDADAE  60
NDSRSGSDHL DAMSGGGEEE DDAEPGSSGK RRKRYHRHTP QQIQELEALF KECPHPDDKQ  120
RGELSTRLGL DPRQVKFWFQ NRRTQMKTQL DRHENSLLKQ ESDKLRSENV TIREAMRNPT  180
CGSCGSSAVL GEVSLEEQHL RIENARLKDE INRVYFLAAK FLNKPLPSLS GGRQLPPHLS  240
LPMPSSSLEL AIGALGGMGS MPPATMPGSM GEFAGGVSNP LGTVITPARA TGAAPPPMVG  300
IDRSMLLELA ISAMDELVKM AQMDEPLWLT TISGAPNKAT LNFVEYARSF VPCLGMKPMG  360
FVSEASRESG LVIINDSAAL VETLMDQMKA ELQVLSPLVP IREVTFLRFS KQLAEGAWAV  420
VDVSIDGLIR GPNSATTSTA GNVKCRRLPS GCVIQDTPNG YCKVTWVEHT EYDEASVHEL  480
YRPLFRSGLA FGARRWLATL QRQCESLAIL MSPGTVSAND ASVITQEGKR SMLKLARRMT  540
GNFCAGVSAS SAREWSKLDG AAGRIGEDVR VMVRKSVNEP GEPPGVVLSA ATSVWVPVAP  600
ERLFNFLRNE QLRADWDILS NGGPMQEMAS VAKGQGRGNS VSLLRAGAMS SNQSSMLILQ  660
ETCTDASGSM VVYAPVDIPA MQLVMNGGDS TYVALLPSGF AILPDGPSNE HNTGRGSLLT  720
VAFQILVNSQ PTAKLTVESV ETVNNLISCT VNKITNALPC DA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457484.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLC5XEA60.0C5XEA6_SORBI; Uncharacterized protein
STRINGSb03g008090.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]