PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g05360.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 902aa MW: 94259.2 Da PI: 9.545

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g05360.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	302.3	1.2e-92	337	700	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaa 80 ++lL ++A av++g+++ a a La l+ a+p+gd+ qRl+a++t AL++r+ p+s+ + e+ aa Zjn_sc00022.1.g05360.1.am.mk 337 RQLLSDAAAAVADGNQTVAAAHLAVLKISANPRGDAEQRLVAMMTGALSSRVGP---------PSSQHLV-DlcGGEQRAA 407 6899***********************************************9.........2222222.2236667789 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skee 157 +l+++vsP++ ++ aN aIl+av+ ++++H++Dfd+s +Q +aL+qaL +R++ sl+iT+v++p+s +++ Zjn_sc00022.1.g05360.1.am.mk 408 CQLLHDVSPCFGLALHGANLAILDAVADHRAIHVVDFDVSI-AQHIALIQALGNRRAAGTSLKITAVADPTSPftpaLAQA 487 9**********************************97.79*********************9988899999 PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 l +t erL++ A++ gv+f+f++ v+ + +++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+ l P+v Zjn_sc00022.1.g05360.1.am.mk 488 LASTTERLKRHAQQAGVEFRFKA-VSCSAAEIEASRLGCQPGEALAVNLAFILSRVPDESVSPANPRDELLRRVRALGPRV 567 *********************.6889999********************************************** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 v++veqe+++n++++++rf++a+ +y a+++sl+a+l r+s +r++ E++ l+ +++n+va ega+r+er+e ++kWr+r+ Zjn_sc00022.1.g05360.1.am.mk 568 VTLVEQELNTNTAPLAARFADACAHYGAVLESLDATLCRDSAQRAWAEAA-LASKACNAVAREGADRVERCEVFGKWRARF 647 *********************************************9.999*********************** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aG++pv++++ +a+ +k+ l g+ v+ ++g l gW++r ++++SaW Zjn_sc00022.1.g05360.1.am.mk 648 GMAGLRPVAIGQGVADRVKARLGPAR-PGFDVKLDNGRLGVGWMGRVVTVASAW 700 *******************999.9************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.781	310	682	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-90	337	700	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MLSSPAPIPP IGQIRPAAVV APRRQRHCCR TGVLASDPKQ SQEYINIRPT LLSFSYRSTL 60 LFVPSPLSAA SAPGFSGMEP AGWCDPRRRA YGYGYGVGSA VDAPPMMRQQ QHPPAASRPD 120 AAAGPTGSVL KRSLSEMERW QQALCLRAVK QRTAAPVPPG HHQLDIGAVL AGAASARARG 180 LSGQPSAGFA GPSPQPSSTL SSLTTASPMQ QLWQRQVMAA PSAPVAKGAA ATARPTTARE 240 MVLLRELEKQ LLGDDEEVEA EAAGSVCGSA VTNSGWGETI HELNSIAATP LPSHPKTMTA 300 TNRYNTAPMS RSPSNSTSSA TSSTASSSPP TSAASSRQLL SDAAAAVADG NQTVAAAHLA 360 VLKISANPRG DAEQRLVAMM TGALSSRVGP PSSQHLVDLC GGEQRAACQL LHDVSPCFGL 420 ALHGANLAIL DAVADHRAIH VVDFDVSIAQ HIALIQALGN RRAAGTSLKI TAVADPTSPF 480 TPALAQALAS TTERLKRHAQ QAGVEFRFKA VSCSAAEIEA SRLGCQPGEA LAVNLAFILS 540 RVPDESVSPA NPRDELLRRV RALGPRVVTL VEQELNTNTA PLAARFADAC AHYGAVLESL 600 DATLCRDSAQ RAWAEAALAS KACNAVAREG ADRVERCEVF GKWRARFGMA GLRPVAIGQG 660 VADRVKARLG PARPGFDVKL DNGRLGVGWM GRVVTVASAW AWGASVDMIS LLVTPVVSAD 720 SLAGFLLLSG FTMGCVRAHG MELSPPRSSK TSGAGRCARE QSKATAGSES ARARLNPESA 780 CSLSVSSRAV ALQAVEFQAC RWLNGPPFRL LFSTLGPRTS LSCLIRPFLF QLSLDLRELS 840 VGWLRQLDGG SLSPSLDATA ETKRGGDAYG TQRLVRLGHA GEGRFKNASL VGCSSSGGHG 900 TA

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MLSSPAPIPP IGQIRPAAVV APRRQRHCCR TGVLASDPKQ SQEYINIRPT LLSFSYRSTL  60
LFVPSPLSAA SAPGFSGMEP AGWCDPRRRA YGYGYGVGSA VDAPPMMRQQ QHPPAASRPD  120
AAAGPTGSVL KRSLSEMERW QQALCLRAVK QRTAAPVPPG HHQLDIGAVL AGAASARARG  180
LSGQPSAGFA GPSPQPSSTL SSLTTASPMQ QLWQRQVMAA PSAPVAKGAA ATARPTTARE  240
MVLLRELEKQ LLGDDEEVEA EAAGSVCGSA VTNSGWGETI HELNSIAATP LPSHPKTMTA  300
TNRYNTAPMS RSPSNSTSSA TSSTASSSPP TSAASSRQLL SDAAAAVADG NQTVAAAHLA  360
VLKISANPRG DAEQRLVAMM TGALSSRVGP PSSQHLVDLC GGEQRAACQL LHDVSPCFGL  420
ALHGANLAIL DAVADHRAIH VVDFDVSIAQ HIALIQALGN RRAAGTSLKI TAVADPTSPF  480
TPALAQALAS TTERLKRHAQ QAGVEFRFKA VSCSAAEIEA SRLGCQPGEA LAVNLAFILS  540
RVPDESVSPA NPRDELLRRV RALGPRVVTL VEQELNTNTA PLAARFADAC AHYGAVLESL  600
DATLCRDSAQ RAWAEAALAS KACNAVAREG ADRVERCEVF GKWRARFGMA GLRPVAIGQG  660
VADRVKARLG PARPGFDVKL DNGRLGVGWM GRVVTVASAW AWGASVDMIS LLVTPVVSAD  720
SLAGFLLLSG FTMGCVRAHG MELSPPRSSK TSGAGRCARE QSKATAGSES ARARLNPESA  780
CSLSVSSRAV ALQAVEFQAC RWLNGPPFRL LFSTLGPRTS LSCLIRPFLF QLSLDLRELS  840
VGWLRQLDGG SLSPSLDATA ETKRGGDAYG TQRLVRLGHA GEGRFKNASL VGCSSSGGHG  900
TA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-37	332	700	1	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953458.1	0.0	scarecrow-like protein 8
TrEMBL	A0A0A9FCJ7	0.0	A0A0A9FCJ7_ARUDO; Uncharacterized protein
STRING	Si016627m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	8e-91	SCARECROW-like 8