 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00022.1.g04840.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
bHLH |
| Protein Properties |
Length: 353aa MW: 37275.4 Da PI: 6.5671 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00022.1.g04840.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 44.3 | 3.3e-14 | 97 | 148 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P+a + ++ + a+i+ A+e++k+L+
Zjn_sc00022.1.g04840.1.sm.mk 97 QRMTHIAVERNRRRQMNEYLAVLRSLMPEA---YVQRGDQASIVGGAIEFVKELE 148
79****************************...*******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MSALVDALCA PSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPVL QHAAGAPGAV 60
AASVAPPGDV EATSSAPRRK RRRRARSCKS KEETESQRMT HIAVERNRRR QMNEYLAVLR 120
SLMPEAYVQR GDQASIVGGA IEFVKELEQQ LQLLEAQKRT LAHHHQHYKA KPDAAAMLAG 180
SSSASAAAST PTTCVVESAT TTTTTSNCSS SVAEDAHSVD APPFARFFMY PQYVWCHQSP 240
RELPAEDGGG RPGVADIEVS LVETHASVRV MAPRRPGQLL RMVAGLQALR LPVLHLTVTT 300
LDALALYSLS VKVEEGCGLP TADDIAAAVH HVLCIIDADA VAQEMLALGA VGH
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 77 | 83 | RRKRRRR |
| 2 | 78 | 82 | RKRRR |
| 3 | 78 | 85 | RKRRRRAR |
| 4 | 97 | 108 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK357579 | 1e-103 | AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06. |
