PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g04840.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 353aa MW: 37275.4 Da PI: 6.5671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g04840.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.3e-14	97	148	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a + ++ + a+i+ A+e++k+L+ Zjn_sc00022.1.g04840.1.sm.mk 97 QRMTHIAVERNRRRQMNEYLAVLRSLMPEA---YVQRGDQASIVGGAIEFVKELE 148 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-18	95	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-11	95	145	No hit	No description
PROSITE profile	PS50888	15.408	96	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	97	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-11	97	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSALVDALCA PSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPVL QHAAGAPGAV 60 AASVAPPGDV EATSSAPRRK RRRRARSCKS KEETESQRMT HIAVERNRRR QMNEYLAVLR 120 SLMPEAYVQR GDQASIVGGA IEFVKELEQQ LQLLEAQKRT LAHHHQHYKA KPDAAAMLAG 180 SSSASAAAST PTTCVVESAT TTTTTSNCSS SVAEDAHSVD APPFARFFMY PQYVWCHQSP 240 RELPAEDGGG RPGVADIEVS LVETHASVRV MAPRRPGQLL RMVAGLQALR LPVLHLTVTT 300 LDALALYSLS VKVEEGCGLP TADDIAAAVH HVLCIIDADA VAQEMLALGA VGH

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSALVDALCA PSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPVL QHAAGAPGAV  60
AASVAPPGDV EATSSAPRRK RRRRARSCKS KEETESQRMT HIAVERNRRR QMNEYLAVLR  120
SLMPEAYVQR GDQASIVGGA IEFVKELEQQ LQLLEAQKRT LAHHHQHYKA KPDAAAMLAG  180
SSSASAAAST PTTCVVESAT TTTTTSNCSS SVAEDAHSVD APPFARFFMY PQYVWCHQSP  240
RELPAEDGGG RPGVADIEVS LVETHASVRV MAPRRPGQLL RMVAGLQALR LPVLHLTVTT  300
LDALALYSLS VKVEEGCGLP TADDIAAAVH HVLCIIDADA VAQEMLALGA VGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	83	RRKRRRR
2	78	82	RKRRR
3	78	85	RKRRRRAR
4	97	108	RMTHIAVERNRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357579	1e-103	AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953510.1	1e-136	transcription factor bHLH94
TrEMBL	A0A0A9CH21	1e-138	A0A0A9CH21_ARUDO; Uncharacterized protein
STRING	Pavir.Ab02502.1.p	1e-134	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	9e-46	beta HLH protein 71