PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g04390.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 455aa MW: 47561.1 Da PI: 6.4504

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g04390.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.5e-31	203	261	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY++eHnh+ Zjn_sc00022.1.g04390.1.sm.mkhc 203 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPSMLVITYNSEHNHP 261 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.696	197	263	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.6E-31	199	263	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-26	200	263	IPR003657	WRKY domain
SMART	SM00774	1.6E-38	202	262	IPR003657	WRKY domain
Pfam	PF03106	3.2E-26	204	261	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MEGDHHHPAG DLADIVRAGG VGLAELPSTA TEWHLLAEPG TLFPPPQPSS SDGHGFGDAL 60 AGLPDPFGLS DYRASSGRGA ADFEAPVGGR GGGGGGGALV DGGGGGVVLP RAMQMPVLSP 120 REIRPYPGIM GGDAVKLAIP TMMPGIAVGQ PCAFDVVGGL QMPSPRGGGG GIKRRKNQAR 180 NVVCIPAPAA LAGGRTTGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV 240 ERSRADPSML VITYNSEHNH PWPTQRNALA GSTRSHHARN NGSNSSSSSS KQNNSLQKQM 300 VKAEPDQTAA AATTTTSTSN GTPQATAVKE EEMIASEMEK RMQQHATDHG TSVALDPGDL 360 MQQMFNQSYR PMIPEGGHHD DFFAELTELE SNPMSLIFSR EYMETKPGGE PAGKEMAAPK 420 GLADPLFDML DWGATIASVA TSAGSSSLEQ GESGL

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MEGDHHHPAG DLADIVRAGG VGLAELPSTA TEWHLLAEPG TLFPPPQPSS SDGHGFGDAL  60
AGLPDPFGLS DYRASSGRGA ADFEAPVGGR GGGGGGGALV DGGGGGVVLP RAMQMPVLSP  120
REIRPYPGIM GGDAVKLAIP TMMPGIAVGQ PCAFDVVGGL QMPSPRGGGG GIKRRKNQAR  180
NVVCIPAPAA LAGGRTTGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV  240
ERSRADPSML VITYNSEHNH PWPTQRNALA GSTRSHHARN NGSNSSSSSS KQNNSLQKQM  300
VKAEPDQTAA AATTTTSTSN GTPQATAVKE EEMIASEMEK RMQQHATDHG TSVALDPGDL  360
MQQMFNQSYR PMIPEGGHHD DFFAELTELE SNPMSLIFSR EYMETKPGGE PAGKEMAAPK  420
GLADPLFDML DWGATIASVA TSAGSSSLEQ GESGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-22	176	264	2	80	Disease resistance protein RRS1
5w3x_D	1e-22	176	264	2	80	Disease resistance protein RRS1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	95	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953547.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	9e-64	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	K3YS51	0.0	K3YS51_SETIT; Uncharacterized protein
STRING	Si017095m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	5e-62	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]