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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00022.1.g03530.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
bHLH |
| Protein Properties |
Length: 272aa MW: 28118.7 Da PI: 9.8822 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00022.1.g03530.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 30.4 | 6.8e-10 | 189 | 230 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ RR+ri +++ +L+el+P+ +K++ +++LekAv Y+k Lq
Zjn_sc00022.1.g03530.1.sm.mk 189 AKTRRERISERLKTLQELVPNG-----TKVDLVTMLEKAVSYVKFLQ 230
589*****************97.....8******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MALVREHTAY GGFDGAEASA FDALLGAEAA ALFGGFTSPE PATSYSGGNV WAGAGTASVL 60
AFGRAVPAVS GEKVFDAWID GVDQSYRAAS PASVSYDATT GCFTLTERAA SSGGAGRTFG 120
LLFPSTSSGS GGSPDRAAPA RASQKRPYIV KGAEPQAVSS KKQCGAGRKT GKAKPAPAVP 180
TKNPQSLAAK TRRERISERL KTLQELVPNG TKVDLVTMLE KAVSYVKFLQ LQVKVLATDE 240
FWPAQGGKAP EISQVREALD AILSSSQKGQ LS
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109662 | 5e-97 | AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Lin CY, et al.
Pathways involved in vanadate-induced root hair formation in Arabidopsis.
Physiol Plant, 2015. 153(1): p. 137-48
[PMID:24833217] - Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
Root hairs.
Arabidopsis Book, 2014. 12: p. e0172
[PMID:24982600] - Kim CM,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
PLoS Genet., 2016. 12(8): p. e1006211
[PMID:27494519] - Moro CF, et al.
S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
New Phytol., 2017. 213(4): p. 1771-1786
[PMID:27880005] - Bahmani R,Kim DG,Kim JA,Hwang S
The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
Front Plant Sci, 2016. 7: p. 1763
[PMID:27933081] - Liao X,Lovett B,Fang W,St Leger RJ
Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
[PMID:28708056] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
[PMID:29233944]
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