PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g01290.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 368aa MW: 40383.9 Da PI: 11.7878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g01290.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.7e-06	294	334	15	54
HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 +i + +++L+ llP +s + +s+ s L++++ YIksL Zjn_sc00022.1.g01290.1.am.mk 294 EISELISKLQALLPASSrRRGSGQASTTKLLKETCSYIKSL 334 68999********555999999**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.835	279	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-6	293	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-6	294	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW 60 ATRPPQAAAV VPVPRSIERA KHAYNHQLLE ASAPGPSPSC IAQRASVVAA SRSHARARLP 120 RSSRRHHANM FARERDGAGE RNARTGAQAL APRCPVGALY VTRPTWQRRR GSTSTPRDWR 180 AFGRRGGQLD VTLIGAYIVA LYCFGSVAFP NSFFLSPALY KGTPLPFCLP HNTLLQPSKK 240 SDLERLTGPL FPPRTLLPVR ERDHSLSAAG EAKHDETSRM SGRRSSRGNI SDEEISELIS 300 KLQALLPASS RRRGSGQAST TKLLKETCSY IKSLHREVDD LSDRLSDLMS TMDHNSPGAE 360 IIRSILRS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW  60
ATRPPQAAAV VPVPRSIERA KHAYNHQLLE ASAPGPSPSC IAQRASVVAA SRSHARARLP  120
RSSRRHHANM FARERDGAGE RNARTGAQAL APRCPVGALY VTRPTWQRRR GSTSTPRDWR  180
AFGRRGGQLD VTLIGAYIVA LYCFGSVAFP NSFFLSPALY KGTPLPFCLP HNTLLQPSKK  240
SDLERLTGPL FPPRTLLPVR ERDHSLSAAG EAKHDETSRM SGRRSSRGNI SDEEISELIS  300
KLQALLPASS RRRGSGQAST TKLLKETCSY IKSLHREVDD LSDRLSDLMS TMDHNSPGAE  360
IIRSILRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975859	1e-101	EU975859.1 Zea mays clone 503296 DNA binding protein mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33989	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	3e-11	bHLH family protein