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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g00190.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 24942.2 Da PI: 9.1711 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2.1e-17 | 115 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +g+WvAeIr r +lg+f+taeeAa+a + a+ +++g Zjn_sc00022.1.g00190.1.sm.mk 115 SKFRGVRRRP-WGKWVAEIRA-------VRKWLGTFDTAEEAARANDVAAVEFRG 161 79********.**********.......9*********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-11 | 115 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.81E-28 | 115 | 171 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-19 | 115 | 170 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-25 | 116 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.563 | 116 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-30 | 116 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVPRLERGGF TLPNAEQENS LFLRALISVV SGDTAVPTLD DLAETKPHVA AATAPAAAAA 60 YCPRCGVLGC PGCEPFAGNA AATTGLSSDS EEERESASHV VTGCVGKRRR RARASKFRGV 120 RRRPWGKWVA EIRAVRKWLG TFDTAEEAAR ANDVAAVEFR GRRAKLNFPA DAAAVLSAHS 180 SWAMVQPVAE SLRESCGSNA VSPVHMTQAP TRRQLGGGPI TDHLDLQGNA KTTAVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 112 | 171 | 10 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 122 | KRRRRARASKFRGVRRR |
2 | 107 | 123 | RRRRARASKFRGVRRRP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 8e-37 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | EU974975 | 8e-37 | EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806850.1 | 3e-69 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A2T7FCK7 | 9e-69 | A0A2T7FCK7_9POAL; Uncharacterized protein | ||||
STRING | OMERI02G31240.1 | 2e-61 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 8e-11 | ERF family protein |