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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00020.1.g05000.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ARF | ||||||||
Protein Properties | Length: 1225aa MW: 133116 Da PI: 9.4225 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.6e-23 | 806 | 907 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+++ Zjn_sc00020.1.g05000.1.am.mkhc 806 FAKTLTQSDANNGGGFSVPRYCAETIlpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 882 89****************************996555555..8999********************************** PP T--TT-EEEEEE-SSSEE..EEEEE-S CS B3 73 gLkegDfvvFkldgrsefelvvkvfrk 99 +L +gD++vF +++ +el+v+++r+ Zjn_sc00020.1.g05000.1.am.mkhc 883 KLVAGDSIVFL--RTEHGELCVGIRRA 907 ***********..55999*******97 PP | |||||||
2 | Auxin_resp | 114.5 | 9.3e-38 | 962 | 1045 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpn 76 aa+ a+ ++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rW+n Zjn_sc00020.1.g05000.1.am.mkhc 962 AASLAARCQPFEVVYYPRASTPEFVVKAALVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWSN 1038 67889999********************************************************************* PP Auxin_resp 77 SkWrsLk 83 S+Wr+L+ Zjn_sc00020.1.g05000.1.am.mkhc 1039 SPWRLLQ 1045 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-36 | 797 | 909 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-28 | 801 | 909 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.12E-21 | 804 | 906 | No hit | No description |
PROSITE profile | PS50863 | 12.929 | 806 | 908 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 806 | 907 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-21 | 806 | 908 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.2E-32 | 962 | 1045 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1225 aa Download sequence Send to blast |
MLGPLRVRPV WCGEAQAGGM PWRHRWETSQ RTVHASLHVS RPSQICVAHG IVPLTLRIQR 60 TAGKTTSSLS IHHRCNIALE ITVYDMSHAA SLCGGCCRRR DAGTTALFDE SAGSAFEQRT 120 SPWRGAGEPP HVRAAPCKGV QCERPMGDGD FAVSLDQLHP VAERAARPVT SRTTNALLLH 180 GPRRAGTARL GTVEAAARRS KIADPEDPMH VPCFRCSPCK TAGAQNSIAT NRHTSAAAVD 240 CRFTARRASK AGLAASDERE GKGSRHAPAG RSPSAATRGA GGVNAGNEKL EQMTTGLCTV 300 ALRTKDGATT ATPSWWSQLV RAACQDRTPI RGNARPTPIR TATHHRLCTV YFTGEGFCCR 360 VNRPNDEHTL EKAERAAMIR NLEAKATYSR WLFLLRLGKS TGQRSRPVAI RVLVVSLSFF 420 HTTIHRNCPR APETDVSDGR VALPENLTNR DGTPLNYAAG DSDISTGVAG GQHSARAAST 480 RGGGRCRKTR PPLRARRLRR WIQREEGTEA HARNRGTDNR ADAGAQIDPR ICVRPGAGNG 540 MIAEDEENPL AGMRGRAGVG CTCHEHHEAS PRARLFAVRA GAADPVGPRF HWAATAAAAG 600 CSHRSCFSPV LFVEGGVVEA AVRRPDSKSQ QQFWCSTIRR SEAMRVGERG IAASLQLLAF 660 RSVGCVGRFG SSLLQLFVGK EEAMKEAAEE RGLDPQLWHA CAGGMVQMPP VRSRVYYFPQ 720 GHAEHAQGGG GGGGAADLAV AVGPRALPAL VLCCVAGVRF LADPETDEVF AKIRLVPVAP 780 GEADFRDEHD ELGGDPAEAR DKLPSFAKTL TQSDANNGGG FSVPRYCAET ILPKLDYRAD 840 PPVQTVLAKD VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRTEHGEL 900 CVGIRRAKRV SFGGMECMSG WNAPGYGAFS AFMKEEENKL MKGAGGYTRG RGKVKIADVV 960 DAASLAARCQ PFEVVYYPRA STPEFVVKAA LVQNAMRIQW CPGMRFKMAF ETEDSSRISW 1020 FMGTIASVQV ADPIRWSNSP WRLLQVTWDE PDLLQNVKCV NPWLVELVSS IPPIHLGPFS 1080 PPRKKLRVPQ HPDFPFDGQL LNPIFRGNPL GPSNSPLCCF PDNAPAGIQG ARHAQFGLSL 1140 TDHQLNRLGP GLFQGELYGQ LADMFGIEKA EIISQLRYHD AAGAVKHAGD EPFSDFMKVV 1200 RRLTIIEGSE GRLQKPLMEC VVEQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-72 | 682 | 1070 | 35 | 392 | Auxin response factor 5 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |