PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00020.1.g01300.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 417aa MW: 44337.3 Da PI: 7.3684

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00020.1.g01300.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	97	147	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 h ++Er RR+r+ f+eL lP++ k + + +K++i+++A++YI+sL+ Zjn_sc00020.1.g01300.1.sm.mk 97 HYMVERERRRRMTGMFAELNAFLPNSNK-KVRAyADKVTIVTEAINYIRSLE 147 889********************633.33446**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.462	92	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	97	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-9	97	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	97	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-8	98	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00114	105	148	No hit	No description
CDD	cd02116	0.00187	340	392	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MAQDGHHAGH QGAVDASDGH GTPAPAVTSP RVSSNQGTWR RVRAVAADDV DNRKDVVDLA 60 PVKVERADVR VTDDDVTKGK GKAPADADGA GNEVPPHYMV ERERRRRMTG MFAELNAFLP 120 NSNKKVRAYA DKVTIVTEAI NYIRSLEDTY QKLEKRKREL ALARQASQPD HGAGSSSAPP 180 PYDAGQATGL SPVLSLDLVG SSSVPPPDAS WLSMGLSPVL PLGRAGSSSV PPPGTFLGTG 240 RSSFLPLGRA GSSSVPPPGT FLGTGQSLVL PLGRADSSSV LPPPAFLGTV RSSVLPRGWS 300 CLPKRRKPEA GEVAVPRPIG FQTYSEANIG LNLMGDDAFI TLCVPKRPGV LLLVLTILEK 360 HHIDVISGHI LSDVNRSKFT LYTRVNVEEI HELDPEAPAP EDILQLAVSE IIVWLSG

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MAQDGHHAGH QGAVDASDGH GTPAPAVTSP RVSSNQGTWR RVRAVAADDV DNRKDVVDLA  60
PVKVERADVR VTDDDVTKGK GKAPADADGA GNEVPPHYMV ERERRRRMTG MFAELNAFLP  120
NSNKKVRAYA DKVTIVTEAI NYIRSLEDTY QKLEKRKREL ALARQASQPD HGAGSSSAPP  180
PYDAGQATGL SPVLSLDLVG SSSVPPPDAS WLSMGLSPVL PLGRAGSSSV PPPGTFLGTG  240
RSSFLPLGRA GSSSVPPPGT FLGTGQSLVL PLGRADSSSV LPPPAFLGTV RSSVLPRGWS  300
CLPKRRKPEA GEVAVPRPIG FQTYSEANIG LNLMGDDAFI TLCVPKRPGV LLLVLTILEK  360
HHIDVISGHI LSDVNRSKFT LYTRVNVEEI HELDPEAPAP EDILQLAVSE IIVWLSG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28209	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-11	bHLH family protein