PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g00570.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 273aa    MW: 29640.3 Da    PI: 10.3604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g00570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.12.7e-121291592656
                                   -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                                   s +++ +LA++l+L  rqV vWFqNrRa+ k
  Zjn_sc00020.1.g00570.1.sm.mk 129 SPNQKNDLARRLNLRPRQVEVWFQNRRARTK 159
                                   678999***********************98 PP
2HD-ZIP_I/II82.27.7e-271161941391
                   HD-ZIP_I/II  13 lLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                                   +LEe  e+++   +p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+  e+Lkr++ +l++en+rL++ev+eLr +l
  Zjn_sc00020.1.g00570.1.sm.mk 116 QLEEDDEANSrSESPNQKNDLARRLNLRPRQVEVWFQNRRARTKLKQTEVHREYLKRWCATLTQENRRLQREVAELR-AL 194
                                   577777777745679*************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.924101161IPR001356Homeobox domain
SMARTSM003899.4E-4103165IPR001356Homeobox domain
PfamPF000461.1E-9129159IPR001356Homeobox domain
SuperFamilySSF466896.53E-10129162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-10129159IPR009057Homeodomain-like
CDDcd000861.19E-8129162No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
CDDcd146868.44E-4152195No hitNo description
SMARTSM003403.1E-19161204IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-6161194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MINTIKQSFL DVGEITAASH ARTGKSLVLD GPGNRPETNR ATLFVGWASS LPKPSHHIGA  60
PSSTGAPIQA APAKATFATV PTSAHAGSGE DHELVLELGT GTAKRAEQDN QKTHLQLEED  120
DEANSRSESP NQKNDLARRL NLRPRQVEVW FQNRRARTKL KQTEVHREYL KRWCATLTQE  180
NRRLQREVAE LRALRTTYPI YYGQPAAGFS SGATRGCPSC GNMAAPYPVI TALSSSVVAA  240
PPPSVSALFA SSRPFLGPFT VHPVLRRQPS ATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.13e-56homeobox-leucine zipper protein HOX7
SwissprotA2X6742e-41HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A3L6QJX58e-57A0A3L6QJX5_PANMI; Homeobox-leucine zipper protein HOX7-like
STRINGSi019736m5e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6348422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-35homeobox from Arabidopsis thaliana