PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g04580.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 431aa    MW: 46276 Da    PI: 6.6788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g04580.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11216292555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksLq 55 
                                   h ++Er+RR+++N++f eL +++P++                              s  ++Ka+iL  A++Y+k+Lq
  Zjn_sc00019.1.g04580.1.am.mk 216 HIIAERKRREKMNQRFIELSTVIPNLRkvrikpkslvstclkstpdtgiaqrkWFFSDQMDKATILSAATRYVKDLQ 292
                                   899**********************777*********************9988566788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.389211291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14215241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-11216296No hitNo description
Gene3DG3DSA:4.10.280.105.0E-16216301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8216292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12217297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14272302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MPEPRGTVDT VRAGRAINGK LYPMLHRAIM EDSSLFMQWA MTTLHHEHQQ AVAVDDDCGE  60
ATTFPSLQAL REASQAAEMI QELIAVDAED HPANSWSSSD GDATDGSSAD NNNNLAPAAV  120
HHDICPVSSP SNPVARRVVD PSRNVAGSGT SPPVTWNFSA AAAAAQTSGD YGDGMLTETA  180
AATRGPRPDL AYGSLPVRRA GLKSSGFIAA TYMQGHIIAE RKRREKMNQR FIELSTVIPN  240
LRKVRIKPKS LVSTCLKSTP DTGIAQRKWF FSDQMDKATI LSAATRYVKD LQEKLKELEA  300
GRRGNHGRSV ESETVVVVKR PYPHAATAAH DGDGSPLSAS SGTPAAASKQ LPEIEARFTN  360
KSVMVRIHCE NGKAVVVKVL AEIEELHLGI IHANVEEGFP VTAEDIVGRL NSVLLPPVHS  420
SCSSPELETG N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224ERKRRE
2220225RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140919.11e-127uncharacterized protein LOC100272997
RefseqXP_020403288.11e-127putative HLH DNA-binding domain superfamily protein isoform X1
RefseqXP_020403289.11e-127putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLB4FS751e-126B4FS75_MAIZE; BHLH transcription factor
STRINGGRMZM2G120021_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-26bHLH family protein