PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00019.1.g03820.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | FAR1 | ||||||||
Protein Properties | Length: 230aa MW: 26063.8 Da PI: 9.0936 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.1 | 5.5e-27 | 12 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 f+n YA+++GF +r+s ++ r+g++++r+fvC keg+r+ ++k+ + k rrt+a+tr+gCka+++vk Zjn_sc00019.1.g03820.1.am.mk 12 FFNGYAHRMGFGTRISVMHGLPRDGTVMSRQFVCAKEGFRTYQSKNelaradagtgdedSGKGRRTHAVTRVGCKAMIRVK 92 9********************************************9***********99999******************* PP FAR1 70 kekdgkwevtkleleHnHelap 91 k+++g+w vtkle+ nH+l p Zjn_sc00019.1.g03820.1.am.mk 93 KQDNGRWTVTKLETAYNHPLIP 114 *******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-25 | 12 | 114 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEFDDDEDAW TFFNGYAHRM GFGTRISVMH GLPRDGTVMS RQFVCAKEGF RTYQSKNELA 60 RADAGTGDED SGKGRRTHAV TRVGCKAMIR VKKQDNGRWT VTKLETAYNH PLIPDQSHCL 120 RPHKPLSECG KQKPFGGHKT VAHPWQLSRH QHPLRRLCIA QVYVKWLQEL EVLLKAAPPG 180 AGDLLLAACA HIVFLNQHHY LLLEPCSTIH AVFGARSNHR SDELFHFSMI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631605.1 | 2e-68 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_025879795.1 | 4e-69 | protein FAR1-RELATED SEQUENCE 9 isoform X2 | ||||
TrEMBL | A0A1E5WFJ1 | 4e-73 | A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | OGLUM03G28710.1 | 4e-71 | (Oryza glumipatula) | ||||
STRING | ONIVA03G29050.1 | 2e-70 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-27 | FAR1-related sequence 5 |