PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g03410.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 349aa    MW: 38032.9 Da    PI: 9.2804
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g03410.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA82.85.6e-26160235158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk...................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     d+p+YVNaKQy++Il+RR +Rak+e+e++                   l     +pylheSRh hA+rR+RgsgGrF
  Zjn_sc00019.1.g03410.1.sm.mkhc 160 DAPIYVNAKQYEGILRRRRARAKAERENRlvkgrkdnppvfclphliiL-LVMLQPYLHESRHLHAMRRARGSGGRF 235
                                     68********************************************963.6789**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.4E-27158238IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.94159238IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27162235IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMSFKSHEGF AALNQAANGG GAPLPWWAGP QLLYGEPAPL SPEETRRDGQ FQVVPGAQGS  60
PDPAPPSAKR AAQPEVLKFS VFQGNSEAGG KGDKAPDQST TIALQSPFSE YNGRFEIGLG  120
QSMVSPNYSS PDQCYGLLTT YAMRTMSGGR MLLPLNAPAD APIYVNAKQY EGILRRRRAR  180
AKAERENRLV KGRKDNPPVF CLPHLIILLV MLQPYLHESR HLHAMRRARG SGGRFLNTKK  240
EGNSKEMSTN GGNKLAPLAQ PCPYSPRLEH GNNQRSCHSR SSASSGLSGS EVSRMYEHDD  300
TDHYNSSIEH LRTPFFTPLP SIMDGEHGVA AIPSFKWAAG DGCFELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-13160237261HAPB protein
4g92_A1e-13160237261HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796559.11e-135nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-135nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-135nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-158A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ia01146.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.35e-20nuclear factor Y, subunit A10