PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g03060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 489aa    MW: 53453.2 Da    PI: 10.8699
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g03060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.3e-25344393251
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   rie+k+ rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyey+s
  Zjn_sc00019.1.g03060.1.am.mk 344 RIEDKTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPGGKLYEYAS 393
                                   8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-32335394IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.427335395IPR002100Transcription factor, MADS-box
CDDcd002651.48E-33336396No hitNo description
SuperFamilySSF554552.09E-24337395IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-25337357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-24344391IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-25357372IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-25372393IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGWPSMMQAR NVPESKSSPR AHANVLFPSH LHAARRHPLR SHCKCVRTPL LARARGSARH  60
MAACCVGPLE RTCGSEQGQP ALPMPRDRRA EEGTLACRLV HAGDDSRAAQ GQQRATRSRS  120
HAVGARRGTH LLRAFLSPPR CLVASDAGAF VLEQALVPPI IRHNTVVRHR GHRDGVQDAS  180
GYLRTSSDSE IFTRPATASV GAGVVSMDRA VLGGSSSPPS VCRPAVHVLR RTSDLPYTYY  240
DARAACLRRV QLLRFLRFAS CISAEEASEL VDQKEEPLDS WSGAKINCTR ERRFIGGLEV  300
GPRSAVTLVS SSSPRPHHPR RRGSHAATHP GEAMARRGPV ELRRIEDKTS RQVRFSKRRA  360
GLFKKAFELA LLCDAEVALL VFSPGGKLYE YASTRFAPSP PPPPPSRLAA TAAADQPPCA  420
CAPCARDYPK YMRVVFPAPL AFPWSGAERL FRLATSTCLN TCDVLYVSST DKGGIWRERA  480
RSRVALDAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-15337394259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-15337394259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-15337394259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-15337394259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A7e-15337394259Myocyte-specific enhancer factor 2A
3kov_B7e-15337394259Myocyte-specific enhancer factor 2A
3kov_I7e-15337394259Myocyte-specific enhancer factor 2A
3kov_J7e-15337394259Myocyte-specific enhancer factor 2A
3mu6_A4e-15337394259Myocyte-specific enhancer factor 2A
3mu6_B4e-15337394259Myocyte-specific enhancer factor 2A
3mu6_C4e-15337394259Myocyte-specific enhancer factor 2A
3mu6_D4e-15337394259Myocyte-specific enhancer factor 2A
3p57_A7e-15337394259Myocyte-specific enhancer factor 2A
3p57_B7e-15337394259Myocyte-specific enhancer factor 2A
3p57_C7e-15337394259Myocyte-specific enhancer factor 2A
3p57_D7e-15337394259Myocyte-specific enhancer factor 2A
3p57_I7e-15337394259Myocyte-specific enhancer factor 2A
3p57_J7e-15337394259Myocyte-specific enhancer factor 2A
6bz1_A8e-15337394360MEF2 CHIMERA
6bz1_B8e-15337394360MEF2 CHIMERA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848192e-66KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4396733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-22AGAMOUS-like 14