PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g02470.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 539aa    MW: 58318.6 Da    PI: 10.7405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g02470.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30473530359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Zjn_sc00019.1.g02470.1.am.mkhc 473 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSTLIVTYEGEHNHN 530
                                     9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-17423469IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.8E-33459531IPR003657WRKY domain
PROSITE profilePS5081130.01466532IPR003657WRKY domain
SuperFamilySSF1182901.83E-26469531IPR003657WRKY domain
SMARTSM007749.6E-37471531IPR003657WRKY domain
PfamPF031065.7E-26473529IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
IDPLEKRRPT RRRARLEPSI RPSTAEVILT VAGLRYSEGP GGYFIETHVL GAPLRLVFFV  60
PFFAFTPSYR LLPDISVALP ADDRRPRASS CAPGFRSAAS TDRLRGELAS SCAAFRCLFC  120
FDAAARKKSH PGSRPSASVC HWPPPPPLLV LLAETAPPVI RSDLLLGRSQ IILLWTLWKS  180
SRGGRALSAL GARVMDEVEA ANRAAVESCH RVLALLAQPH QDPAQLTSLA AGTDEACAKF  240
RKVVSLLSNG GVGGEAGTSG GSGSHPKAKV ASRRQNPGLF SQKGFLDSNT PVVVLNSAQP  300
STSSAQMYPR NRALDVQSVN PLGGPPKMVQ PLSAHFQFGN VSSRYHFQNQ QQEKLQAKMF  360
KRSNSGINLK FDSMGATMSS ARSFLSSLSM EGSVASLDGK SSSFHLIGGP AMSDPVNAQQ  420
APRRRCTGRG EDGTGKCAVT GRCHCSKRSR KLRVKRSIKV PAISNKIADI PPDEYSWRKY  480
GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCVDDSSTLI VTYEGEHNHN RMPTQSAQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-204695331275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795417.10.0protein WRKY1-like isoform X1
SwissprotQ32SG47e-87WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A2S3IK150.0A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3I70.0A0A2T7C3I7_9POAL; Uncharacterized protein
STRINGPavir.Ia01239.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-67WRKY DNA-binding protein 74