PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00019.1.g02300.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 489aa MW: 55764.7 Da PI: 8.6033 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 37 | 84 | 42 | 91 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +g+ W+v++ + ++r+ l kGWk+F+ +n+L+ g++++F+ ++++ + Zjn_sc00019.1.g02300.1.sm.mkhc 37 NGKNWKVRC--VRVDKRVRLWKGWKGFAADNNLQLGEICLFEILKDKQYT 84 69*******..999999*************************77766654 PP | |||||||
2 | B3 | 56.1 | 6.6e-18 | 172 | 260 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 kv + ++++ ++lp +fa++++g s +tl+++sg++W++++ + ++++v+++GW+eFv +++++egD ++ Zjn_sc00019.1.g02300.1.sm.mkhc 172 KVV--AGDFTES-ISLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLL 244 555..4444454.9*******888666..6779***************.3444455*********************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 Fk++g s f v vf++ Zjn_sc00019.1.g02300.1.sm.mkhc 245 FKYTGASAF--DVLVFDA 260 ****99999..8888876 PP | |||||||
3 | B3 | 42.3 | 1.3e-13 | 381 | 480 | 1 | 99 |
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 f++v+ ps+v + g+++l+ +fa++++g ++++l+ +sg W ++i ++ ++ + ++GW +F ++ng+ e Zjn_sc00019.1.g02300.1.sm.mkhc 381 FVQVMHPSHVRGKkrGIVILSAEFATKFMGT--LRREIILRRSSGvGAWHARYICNRFARG-LCGRGWCSFTEDNGVVE 456 6777878887655448899*********887..6679********99******86666655.7999************* PP T-EEEEEE-SS.SEE..EEEEE-S CS B3 77 gDfvvFkldgr.sefelvvkvfrk 99 +D+++F++++ ++ +++v+v+rk Zjn_sc00019.1.g02300.1.sm.mkhc 457 RDVCLFEVMQGaRRPTMTVHVLRK 480 *******9977799999**99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1 | 4 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-14 | 12 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-13 | 36 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.5E-8 | 37 | 84 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-8 | 37 | 76 | No hit | No description |
PROSITE profile | PS50863 | 10.743 | 37 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-23 | 164 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-23 | 166 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.367 | 167 | 261 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.57E-17 | 168 | 259 | No hit | No description |
SMART | SM01019 | 1.8E-11 | 170 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-15 | 171 | 259 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.44E-16 | 375 | 479 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 375 | 479 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-9 | 379 | 476 | No hit | No description |
Pfam | PF02362 | 2.6E-11 | 381 | 480 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0073 | 381 | 481 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.163 | 398 | 481 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MKKKLKEKVR AIHSEIPVYV CVIKKSNIYG TARCMCNGKN WKVRCVRVDK RVRLWKGWKG 60 FAADNNLQLG EICLFEILKD KQYTMNLSRL YTSETSPRKY RSFTWTPRAA KLKSPELLPF 120 HPSLLGFHLE IPFYLPTLQI MKNLDKKCRV CMEWQEHCYW SHMADEEKHF FKVVAGDFTE 180 SISLPSRFAN NFNGHISEVV TLKSPSGKTW SIRVGSDDGD EVVFRSGWNE FVGEQRVEEG 240 DCLLFKYTGA SAFDVLVFDA SGCEKKTPPC VSQIRGYQQE EDGGDAQLEL EAAVHKNTGR 300 SNASTTNLPD EQDGWGWRAC EVKEEDEDDV EILDGDGGAP ATAAGYYFGN VGPASEYRLT 360 EEDREQIWSV RVPVRPRNPV FVQVMHPSHV RGKKRGIVIL SAEFATKFMG TLRREIILRR 420 SSGVGAWHAR YICNRFARGL CGRGWCSFTE DNGVVERDVC LFEVMQGARR PTMTVHVLRK 480 VRGRYVPLS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982409.2 | 1e-141 | B3 domain-containing protein Os03g0622200 | ||||
Swissprot | Q10GM3 | 1e-105 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A368SJ49 | 1e-139 | A0A368SJ49_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib03973.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-27 | B3 family protein |
Publications ? help Back to Top | |||
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