PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g02300.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 489aa    MW: 55764.7 Da    PI: 8.6033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g02300.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-1037844291
                                    TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                              B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                                    +g+ W+v++   + ++r+ l kGWk+F+ +n+L+ g++++F+  ++++ +
  Zjn_sc00019.1.g02300.1.sm.mkhc 37 NGKNWKVRC--VRVDKRVRLWKGWKGFAADNNLQLGEICLFEILKDKQYT 84
                                    69*******..999999*************************77766654 PP

2B356.16.6e-18172260399
                                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                     kv   +  ++++ ++lp +fa++++g    s  +tl+++sg++W++++  +  ++++v+++GW+eFv +++++egD ++
  Zjn_sc00019.1.g02300.1.sm.mkhc 172 KVV--AGDFTES-ISLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLL 244
                                     555..4444454.9*******888666..6779***************.3444455*********************** PP

                                     EEE-SSSEE..EEEEE-S CS
                              B3  82 Fkldgrsefelvvkvfrk 99 
                                     Fk++g s f   v vf++
  Zjn_sc00019.1.g02300.1.sm.mkhc 245 FKYTGASAF--DVLVFDA 260
                                     ****99999..8888876 PP

3B342.31.3e-13381480199
                                     EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                              B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                     f++v+ ps+v  +  g+++l+ +fa++++g     ++++l+ +sg   W  ++i ++  ++ + ++GW +F ++ng+ e
  Zjn_sc00019.1.g02300.1.sm.mkhc 381 FVQVMHPSHVRGKkrGIVILSAEFATKFMGT--LRREIILRRSSGvGAWHARYICNRFARG-LCGRGWCSFTEDNGVVE 456
                                     6777878887655448899*********887..6679********99******86666655.7999************* PP

                                     T-EEEEEE-SS.SEE..EEEEE-S CS
                              B3  77 gDfvvFkldgr.sefelvvkvfrk 99 
                                     +D+++F++++  ++ +++v+v+rk
  Zjn_sc00019.1.g02300.1.sm.mkhc 457 RDVCLFEVMQGaRRPTMTVHVLRK 480
                                     *******9977799999**99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191493IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-141285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-133686IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-83784IPR003340B3 DNA binding domain
CDDcd100171.62E-83776No hitNo description
PROSITE profilePS5086310.7433791IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-23164263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-23166267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.367167261IPR003340B3 DNA binding domain
CDDcd100171.57E-17168259No hitNo description
SMARTSM010191.8E-11170261IPR003340B3 DNA binding domain
PfamPF023623.5E-15171259IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-16375479IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-17375479IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-9379476No hitNo description
PfamPF023622.6E-11381480IPR003340B3 DNA binding domain
SMARTSM010190.0073381481IPR003340B3 DNA binding domain
PROSITE profilePS508638.163398481IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MKKKLKEKVR AIHSEIPVYV CVIKKSNIYG TARCMCNGKN WKVRCVRVDK RVRLWKGWKG  60
FAADNNLQLG EICLFEILKD KQYTMNLSRL YTSETSPRKY RSFTWTPRAA KLKSPELLPF  120
HPSLLGFHLE IPFYLPTLQI MKNLDKKCRV CMEWQEHCYW SHMADEEKHF FKVVAGDFTE  180
SISLPSRFAN NFNGHISEVV TLKSPSGKTW SIRVGSDDGD EVVFRSGWNE FVGEQRVEEG  240
DCLLFKYTGA SAFDVLVFDA SGCEKKTPPC VSQIRGYQQE EDGGDAQLEL EAAVHKNTGR  300
SNASTTNLPD EQDGWGWRAC EVKEEDEDDV EILDGDGGAP ATAAGYYFGN VGPASEYRLT  360
EEDREQIWSV RVPVRPRNPV FVQVMHPSHV RGKKRGIVIL SAEFATKFMG TLRREIILRR  420
SSGVGAWHAR YICNRFARGL CGRGWCSFTE DNGVVERDVC LFEVMQGARR PTMTVHVLRK  480
VRGRYVPLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.21e-141B3 domain-containing protein Os03g0622200
SwissprotQ10GM31e-105Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A368SJ491e-139A0A368SJ49_SETIT; Uncharacterized protein
STRINGPavir.Ib03973.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-27B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]