PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00019.1.g02280.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 851aa MW: 93288.8 Da PI: 9.7742

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00019.1.g02280.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.5	3.8e-10	110	133	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 pr+rWt+ LH++Fv+ave LGG+e Zjn_sc00019.1.g02280.1.am.mk 110 PRMRWTTALHAHFVHAVELLGGHE 133 8*********************97 PP
2	NAM	175.3	1.8e-54	556	681	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL++kv++ + + ++i++vd++k+ePw+Lp+k++ +ekewyfFs rd+ky+tg r+nrat+sg Zjn_sc00019.1.g02280.1.am.mk 556 LPPGFRFHPTDEELVTYYLTHKVSDFAFAT-RAIADVDLNKCEPWELPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSG 635 79***********************999.88***********999999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkdke+++ g lvg+kktLvfy+grapkg kt+Wvmheyrl Zjn_sc00019.1.g02280.1.am.mk 636 YWKTTGKDKEIFH-CGMLVGMKKTLVFYRGRAPKGGKTSWVMHEYRL 681 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-7	107	134	IPR009057	Homeodomain-like
SuperFamily	SSF101941	6.02E-63	550	702	IPR003441	NAC domain
PROSITE profile	PS51005	59.423	556	702	IPR003441	NAC domain
Pfam	PF02365	3.4E-28	557	681	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence Send to blast
MPFLTHAHKL ASYKNHMSYG THDLITKIPS YSISLNKNKL NSLLLRGLDS TATDMAHQDT 60 VHCAIQQKRL HQPDQIQRFK KSSSGSQTLS GGAVRSGNGS GGGKRSSRAP RMRWTTALHA 120 HFVHAVELLG GHESHAEMRD MGFLRRGCEV YGFDAFNYHT SNPAVSARRS RDRAIYHCCA 180 QGRGRVSNDS ALLLATEIIM CGKTHQSSSS ALAGRPLKYT AVLVLPRWWR FGSASGTTTA 240 TMTPGGAVRE APSWCARPPF SQQAPLPLPC PYLMSSHRSR YLLAQNHQVI TINHIQGWKR 300 GPPAQHGTAA HSAGHVETGN SITRPPSWSY SGIASRWSCP TMATTKGSGG AEEQAAQRMK 360 QQVSSSSSMP SLEISLGRQG WQQDQPQPQQ RGKELTLLKC LVKLGHNVHE CCEDLRMLPS 420 SGRSELSIGS PLAGFWSNNE DSATRRWMEL AGNSSLHRGV NVKRRIDASS SILSTSPSPS 480 PVTLAVVFGP RLVRPREPAL EDEEDRPEGG RTCGEGRINS VCSSATIYAP LPERLSPPLP 540 RAGRALRPRV VMEEGLPPGF RFHPTDEELV TYYLTHKVSD FAFATRAIAD VDLNKCEPWE 600 LPSKASMGEK EWYFFSMRDR KYPTGIRTNR ATDSGYWKTT GKDKEIFHCG MLVGMKKTLV 660 FYRGRAPKGG KTSWVMHEYR LQNKFPYKPN KEEWVVCRVF KKCQIIKVRP PTDSPTMDSL 720 GELDVSSILS NLTPASVHTS SSAPGEGFGH RVDMNAYMSW MAAANQGAAA AAMIPWAMVP 780 GLLGNVFAAP NQPYAGCSPS QPREIGGVVA NVGGGQAMFG SSVAKVDMEC DQQHQPPPQQ 840 LGIDDSTWGA F

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence Send to blast

MPFLTHAHKL ASYKNHMSYG THDLITKIPS YSISLNKNKL NSLLLRGLDS TATDMAHQDT  60
VHCAIQQKRL HQPDQIQRFK KSSSGSQTLS GGAVRSGNGS GGGKRSSRAP RMRWTTALHA  120
HFVHAVELLG GHESHAEMRD MGFLRRGCEV YGFDAFNYHT SNPAVSARRS RDRAIYHCCA  180
QGRGRVSNDS ALLLATEIIM CGKTHQSSSS ALAGRPLKYT AVLVLPRWWR FGSASGTTTA  240
TMTPGGAVRE APSWCARPPF SQQAPLPLPC PYLMSSHRSR YLLAQNHQVI TINHIQGWKR  300
GPPAQHGTAA HSAGHVETGN SITRPPSWSY SGIASRWSCP TMATTKGSGG AEEQAAQRMK  360
QQVSSSSSMP SLEISLGRQG WQQDQPQPQQ RGKELTLLKC LVKLGHNVHE CCEDLRMLPS  420
SGRSELSIGS PLAGFWSNNE DSATRRWMEL AGNSSLHRGV NVKRRIDASS SILSTSPSPS  480
PVTLAVVFGP RLVRPREPAL EDEEDRPEGG RTCGEGRINS VCSSATIYAP LPERLSPPLP  540
RAGRALRPRV VMEEGLPPGF RFHPTDEELV TYYLTHKVSD FAFATRAIAD VDLNKCEPWE  600
LPSKASMGEK EWYFFSMRDR KYPTGIRTNR ATDSGYWKTT GKDKEIFHCG MLVGMKKTLV  660
FYRGRAPKGG KTSWVMHEYR LQNKFPYKPN KEEWVVCRVF KKCQIIKVRP PTDSPTMDSL  720
GELDVSSILS NLTPASVHTS SSAPGEGFGH RVDMNAYMSW MAAANQGAAA AAMIPWAMVP  780
GLLGNVFAAP NQPYAGCSPS QPREIGGVVA NVGGGQAMFG SSVAKVDMEC DQQHQPPPQQ  840
LGIDDSTWGA F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-53	556	702	20	168	NAC domain-containing protein 19
3swm_B	7e-53	556	702	20	168	NAC domain-containing protein 19
3swm_C	7e-53	556	702	20	168	NAC domain-containing protein 19
3swm_D	7e-53	556	702	20	168	NAC domain-containing protein 19
3swp_A	7e-53	556	702	20	168	NAC domain-containing protein 19
3swp_B	7e-53	556	702	20	168	NAC domain-containing protein 19
3swp_C	7e-53	556	702	20	168	NAC domain-containing protein 19
3swp_D	7e-53	556	702	20	168	NAC domain-containing protein 19

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363171	1e-169	AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	2e-85	NAC domain containing protein 58