PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g01780.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 413aa    MW: 44785.2 Da    PI: 4.3172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g01780.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1954103255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Zjn_sc00019.1.g01780.1.sm.mk  54 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 103
                                   789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-3053110No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2754110IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1954111IPR016177DNA-binding domain
PROSITE profilePS5103219.59954111IPR001471AP2/ERF domain
PfamPF008471.0E-1354103IPR001471AP2/ERF domain
SMARTSM003802.3E-3554117IPR001471AP2/ERF domain
PRINTSPR003676.1E-85566IPR001471AP2/ERF domain
PRINTSPR003676.1E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MALKRKASPG MTDDLPCEDL RSPPVAAVAS AAEPRESWAD AVGAVAAAQR ARKRFVGVRQ  60
RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL LRGSNTRTNF WPRPAGTAAA  120
AMAARQHDSV PPTTALPSKV TNLLLLRLKK ARSGHGFGDY LDVSATTEQS LMQQQQQLRQ  180
DDGLAEDHCN FQVDDFLSYD STGDESGIVR HEDESNCSQE ADDGGEEVVT EEEEEAPLDL  240
RFMDANPSPP TEIITPFEMV ASELGGVEAE PDADGGYGTA DAEPSTTAIH EVLKRMKYER  300
KISASFYALS GVSECLRMRL SDADDLSGDA ASRRHELAFS GLREACRKKQ HEQQQEADEE  360
GGDVGREEER ESSTSSNISS LSSSPEAAST SPEANAVDSD VLLWSSLDLP SIC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-73CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796844.11e-125uncharacterized protein LOC112876880
TrEMBLA0A2T7C3V41e-131A0A2T7C3V4_9POAL; Uncharacterized protein
STRINGGRMZM2G010100_P011e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-20related to AP2 11