PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g00440.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 270aa    MW: 29340.7 Da    PI: 8.6321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g00440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34e-181150342
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  i n+s r  tf kRr+g++KKA+EL +LCd++++v+ +++
  Zjn_sc00019.1.g00440.1.sm.mk 11 IVNDSTRRATFKKRRKGLMKKASELATLCDVDACVVAYGE 50
                                  7799**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.731150IPR002100Transcription factor, MADS-box
CDDcd002667.92E-33285No hitNo description
PRINTSPR004043.3E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-24395IPR002100Transcription factor, MADS-box
PfamPF003198.7E-181150IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MARKKVTLQW IVNDSTRRAT FKKRRKGLMK KASELATLCD VDACVVAYGE GESQPEVWPS  60
VAEAARILAR FKAMPELDQC KKMMDMEGFL KQRIDKLREQ LHKAQRENRE RETTLLLHDA  120
IVGRRPGLVG LSIEELTSLG SMTDERLQNV NKALENLQAQ GGQGLPATAL QLQLSQAASM  180
TLPPLVTYPA PGVGQRDVQA PPNMQCWMID VPKPGGELGA MLYGGGFGGG STQQGFDGAG  240
SFTAGGHMTQ LGNMGAGFQW PDPGQSFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIVNDSTRRATFKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277161e-149KJ727716.1 Zea mays clone pUT5655 MADS transcription factor (MADS64) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646559.11e-109agamous-like MADS-box protein AGL80
TrEMBLA0A1E5ULN71e-120A0A1E5ULN7_9POAL; Agamous-like MADS-box protein AGL80
STRINGGRMZM5G853066_P011e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-40AGAMOUS-like 80