PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g06960.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 601aa    MW: 64633.8 Da    PI: 10.4106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g06960.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-11351387332
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC......... CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkas.......k 32 
                                   r+h+e+ErrRR+riN  +++Lr+llP+a+       +
  Zjn_sc00018.1.g06960.1.am.mk 351 RSHSEAERRRRQRINGHLAKLRSLLPNATkddttttS 387
                                   78*************************8544444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.853348432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9351380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-7351435No hitNo description
PfamPF000101.6E-8351387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12351435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7354438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9414438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.8E-6478525No hitNo description
SuperFamilySSF550215.04E-5478525No hitNo description
CDDcd048737.94E-7478521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MRNAAIWEPG TIRFPTLLSD VVRRREAGRC MLYRARAGTK RRAKGSSERQ KGQQTLLRTA  60
RHRQWEGAAA VGPRARVRDE TGRGMLRSPC MTQSSGRASG PGARGGNNCV RSGAAEEAHA  120
PDKRPRSLYG TTGEEGRRQR RAVLCGSGGT PEPGCLFPLT ARQGRVARLC RAGSGTTAAP  180
MDHGFMVPEW VAATSIVVLK RRRPFDRERE QPEATTGSTP PPTTGLSSRA QGRQPGMWDG  240
GVEHGSQEAA HHPLLSKPWL GAAPFSEPGV RVFEAAGAGY ACDVFGGLGH GGDGVFGFGF  300
DAMPQQRRPR QHDDPQRGKA VVSGLLGSLQ AELGRMAARD MMDAKALAAS RSHSEAERRR  360
RQRINGHLAK LRSLLPNATK DDTTTTSTTY THLGKRLKRP CECREKSCTA TAFLGTDKAS  420
LLAEVLDHVK ELKRQTSPMM VASDEEASGT AQPLPTEADE LAVDAAVGSD GRLLARASLC  480
CKDRPDLIPD IVRALAALGM RARRAEITTL GGRVRSVLLI TADEGTGGDG DGEDDDRPIA  540
LHDDDERTAS HRRHECIASV QEALRGVMDR RAASSDTSSP GGGGSIKRQR MNYAAQRQCS  600
L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462365.11e-114transcription factor bHLH30
TrEMBLC5XC821e-113C5XC82_SORBI; Uncharacterized protein
STRINGSb02g024460.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-28bHLH family protein