PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g03930.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 578aa    MW: 63912.3 Da    PI: 10.0011
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g03930.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.25.7e-29323420297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsf 80 
                                   +++rlws+ De+v+L+Gl  ++ak+g+   ++ di++++  + + +s+kvs++ql++K+rrLK+K+++  +++k+g+ep+f
  Zjn_sc00018.1.g03930.1.am.mk 323 RPSRLWSQGDELVILRGLAAYRAKHGAlpGSMYDISKLHGNIGEVLSVKVSTTQLSDKVRRLKQKYHQLATRTKNGREPDF 403
                                   679************************666677************************************************ PP

                        DUF573  81 skehdqkifelskkiWg 97 
                                    +++d++++el kk+Wg
  Zjn_sc00018.1.g03930.1.am.mk 404 PTSQDHSVYELGKKVWG 420
                                   ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031341.2E-23368IPR004345TB2/DP1/HVA22-related protein
PfamPF045043.8E-26325420IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MESTSKLDDE QWLAYWILYS FITLMEMAAE QVLYWIPLWY EVKLLFVAWL VLPQFRGASF  60
IYDRFVREQL RKHGVRLHGH GADHGPHHDL KFVYGGLPEE PSSNGTGPKD IGFSEFQLPE  120
NSVSFGSRPS SSFSKPQASL GHGIVGVPSG QPAACRSACQ SIIHTSAAPN ELGSRSPNAR  180
QPHSALKKLA VQVGDHDSSS HQREEIEEPN HPVPCPRLRL RSPPPVRRNG TEASGGGVGV  240
RVRGIRRGRK RVTPPALPVP VQDVVAADGN ASPLPSRAEA AAIKPLSSRP MDPPRRSAPS  300
FSESRPKRPR SAAIPAVMEH LKRPSRLWSQ GDELVILRGL AAYRAKHGAL PGSMYDISKL  360
HGNIGEVLSV KVSTTQLSDK VRRLKQKYHQ LATRTKNGRE PDFPTSQDHS VYELGKKVWG  420
AIGSAGADAD AGGGGAIVEH ENTDGLHSEE EHQSGESDGD MDIWRDDHDR KNKRVKPISM  480
ANGNGTRFGA MSSSRRGKAE FEKGKDAYPY LWETVEELSR QHPNGVAFKK AFEMIEGAKA  540
RGMEEKLRKF RVAEVRHQLR RMELMKETVK MVLDALEG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398017e-64BT039801.1 Zea mays full-length cDNA clone ZM_BFc0045M21 mRNA, complete cds.
GenBankBT0410097e-64BT041009.1 Zea mays full-length cDNA clone ZM_BFc0166A12 mRNA, complete cds.
GenBankEU9681867e-64EU968186.1 Zea mays clone 316365 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460312.11e-145STOREKEEPER protein
TrEMBLC5X2781e-143C5X278_SORBI; Uncharacterized protein
STRINGSb02g026310.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-13DNA-binding storekeeper protein-related transcriptional regulator