PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g03730.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 791aa MW: 86177.2 Da PI: 11.1524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g03730.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	710	750	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ +L++l+P +K++ a++L +A++Y+k L Zjn_sc00018.1.g03730.1.am.mk 710 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 750 599***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.675	701	750	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-13	702	766	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-14	705	762	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	707	756	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	711	750	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.48E-5	723	755	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MLLDHQSSFH SGAPGRIAFS LNVPWPCFAA RDLSSHSAAA PARLPVVQIS LHARMIMGSW 60 LAAGRGGSHQ AARRESEMGR RWRKAKKKAL GSWGHDVVEA SRVHAKAASA RPVISDRSEI 120 GIKINDGVPG GIPPPGKRRS SPSSAHGWTH LWSRAWPLPQ VYSIVPYTTH EAGDEPCGEL 180 AVARARRVVH GAPHGVCLPL PPCSDASRLC APWTGVRSDL WPVSENGKGS IVVHPRRARM 240 RTAVDHMRRS VVRQRDALSL RVRFGLPGRR NMFGRSGFYR SYTYGRTVGS STVTGPAKGR 300 VARGQANWPS DRNKMAPCDY STRKQNVASQ PAGQARRKSK RTRQTRRTDD EADEVGTFER 360 APRLTLARDG SNPKKAACLP VAHHVPLTTK RASVDGCATH ELGRQLLLRR PDGGCGLSLL 420 IIPAMIAAHV SRERHGRPRC RVRRLWRVVT HAEHRRQANE RNMPVLDLVT GLWAAARAVG 480 SRAAETLEAG PEPECHQSDS AEQSDRGLQH ACGKRSPTTA STCQAVAGWR KFAGGRGEML 540 FGVQKGRIQR GSDRGIRRIA TPEAQLELMK TMLELEQLTA LDQSLMAPMS PPISPMQTPA 600 AAQSHCFSPP PYMSPTIIST GSPDGQYAAP AAYTAISGSE QHQQDHYVLS PGADAPTGAM 660 LGSSTSSADA MREVMFHIAA LQPVEIDPEA VRPPKRRNVR ISKDPQSVAA RLRRERISER 720 IRTLQRLVPG GTKMDTASML DEAIHYVKFL KSQVQSLERA AAATHHAAAL GAAYPAFHAS 780 WQYALPQGGE L

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MLLDHQSSFH SGAPGRIAFS LNVPWPCFAA RDLSSHSAAA PARLPVVQIS LHARMIMGSW  60
LAAGRGGSHQ AARRESEMGR RWRKAKKKAL GSWGHDVVEA SRVHAKAASA RPVISDRSEI  120
GIKINDGVPG GIPPPGKRRS SPSSAHGWTH LWSRAWPLPQ VYSIVPYTTH EAGDEPCGEL  180
AVARARRVVH GAPHGVCLPL PPCSDASRLC APWTGVRSDL WPVSENGKGS IVVHPRRARM  240
RTAVDHMRRS VVRQRDALSL RVRFGLPGRR NMFGRSGFYR SYTYGRTVGS STVTGPAKGR  300
VARGQANWPS DRNKMAPCDY STRKQNVASQ PAGQARRKSK RTRQTRRTDD EADEVGTFER  360
APRLTLARDG SNPKKAACLP VAHHVPLTTK RASVDGCATH ELGRQLLLRR PDGGCGLSLL  420
IIPAMIAAHV SRERHGRPRC RVRRLWRVVT HAEHRRQANE RNMPVLDLVT GLWAAARAVG  480
SRAAETLEAG PEPECHQSDS AEQSDRGLQH ACGKRSPTTA STCQAVAGWR KFAGGRGEML  540
FGVQKGRIQR GSDRGIRRIA TPEAQLELMK TMLELEQLTA LDQSLMAPMS PPISPMQTPA  600
AAQSHCFSPP PYMSPTIIST GSPDGQYAAP AAYTAISGSE QHQQDHYVLS PGADAPTGAM  660
LGSSTSSADA MREVMFHIAA LQPVEIDPEA VRPPKRRNVR ISKDPQSVAA RLRRERISER  720
IRTLQRLVPG GTKMDTASML DEAIHYVKFL KSQVQSLERA AAATHHAAAL GAAYPAFHAS  780
WQYALPQGGE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	691	696	RPPKRR
2	710	715	RLRRER

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060477	1e-130	AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence.
GenBank	AK070458	1e-130	AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence.
GenBank	AP005655	1e-130	AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07.
GenBank	AP006057	1e-130	AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04.
GenBank	AP014965	1e-130	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	EU956156	1e-130	EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
GenBank	KJ726974	1e-130	KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3103	36	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	6e-38	bHLH family protein