PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g03250.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 391aa MW: 44152 Da PI: 8.7216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g03250.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.9	1.2e-11	178	252	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn Y+ e GF + ++s+++ rn+ C + + ++ + + r++ ++gCka++++++++d+ w++ + Zjn_sc00018.1.g03250.1.sm.mk 178 NYYNLYSWERGFGIWCNSSNTN-RNQ--------CVMMKEMRTPRAD------VRSSIKCGCKARMVLRRTDDHGWYIRLF 243 5899999999999999888877.444........5554444444333......78999********************* PP FAR1 82 eleHnHela 90 + +HnH+l+ Zjn_sc00018.1.g03250.1.sm.mk 244 VDDHNHPLS 252 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-8	179	252	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MFYWSKKIRP IDSRGVVHAS ELCRQSPVAS GKGDECPSES ETESQSPWPE DDKVPSMGRG 60 KREGAGPPHG VGACDAICAP DCTMHITVQT IANSSDTPVL HTHGFVATHA VEEVEDARQW 120 SMGRRRHLGV RGPAARPAVA GRMTAIEQVL LSYKERSSGC VIVSKEGITF DSYEEGFNYY 180 NLYSWERGFG IWCNSSNTNR NQCVMMKEMR TPRADVRSSI KCGCKARMVL RRTDDHGWYI 240 RLFVDDHNHP LSERLGEKRH WASHRHLDMY STNLIKHLQS NNVNLSKAYG VMTSIFGNVF 300 CAGQISTQRS GSANHMLKNE VPPGAPMHVF VGQYMKLLAQ RMEDEDFKER RSKLETRTPT 360 SNTSIGRHAM HVYSPRMMNV LHKHIFDAGY Y

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MFYWSKKIRP IDSRGVVHAS ELCRQSPVAS GKGDECPSES ETESQSPWPE DDKVPSMGRG  60
KREGAGPPHG VGACDAICAP DCTMHITVQT IANSSDTPVL HTHGFVATHA VEEVEDARQW  120
SMGRRRHLGV RGPAARPAVA GRMTAIEQVL LSYKERSSGC VIVSKEGITF DSYEEGFNYY  180
NLYSWERGFG IWCNSSNTNR NQCVMMKEMR TPRADVRSSI KCGCKARMVL RRTDDHGWYI  240
RLFVDDHNHP LSERLGEKRH WASHRHLDMY STNLIKHLQS NNVNLSKAYG VMTSIFGNVF  300
CAGQISTQRS GSANHMLKNE VPPGAPMHVF VGQYMKLLAQ RMEDEDFKER RSKLETRTPT  360
SNTSIGRHAM HVYSPRMMNV LHKHIFDAGY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-08	FAR1-related sequence 4