PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g03210.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 841aa MW: 89809.5 Da PI: 10.2477

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g03210.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	656	702	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+llP a +++Ka+ L ++v+++++L Zjn_sc00018.1.g03210.1.am.mk 656 RNHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 702 68***********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.44	653	702	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	656	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.61E-12	656	703	No hit	No description
Pfam	PF00010	8.4E-10	656	702	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-13	656	705	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-12	659	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	3.1E-4	748	814	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MDPSAGATRR RAEQCLSVAE KLLVARDLEG CKEFSSQALA TDPDTPGAED LHAAASVLLA 60 AERRRLANGT PDPYAVLGLD PANPSSRHPD AIHAHYRRLS FLLNRSRSDS PFSFAFTNAA 120 QIISDALRFF SNPALKSALD ADLDAAAAAA EAAWAYQAPA GHRPQSQSPI PARHNPPFAT 180 PSPRPTPPPA RSPAAASPRQ TPPPAVPSTR PTPARASLAP WQTPPRASLA PWQTPPPASP 240 SPWPTPPAAS PPRPQLPPAA STPRPAPPQA ISPPRPTPLR DGPKTWPTPP APSPQLPVAP 300 MVPPVASGTP PSSTFWTVCT ACRHIHQYDR LYERRKLLCP SCRQPFEAEA MAEPPPIVPG 360 TDMYYCTWGF FPVGFPGCPG FERLVNSQLQ GPDKMNAPWL RGSAGDAGVK GNAGDAGVKG 420 NAENGVPVSA AAEIPVEVPA TILAAKPMRV KVGAKKRGRP KDPSSAASKS KGRDPTTSSS 480 IQRLRGCFLS ATDAIDACTT PYFRHAIDGR QHRSSQRGRA LLATFRARPE RCNGIEDSGG 540 RVSPYAVVSL SLSHPQSLEM GERCPDPGKA KMTGPVSPDD HRTRKRRRQT DGDHKQLFFS 600 RPDRAADRYA NTAAAPPGRV ALSSTRRMVP FQSEEAEAAL DGECSAPAKT RSGPSRNHSE 660 AERKRRQRIN AHLATLRTLL PAASRMDKAA LLGEVVRHVR ELRGEADAAA AGAAVAVPGE 720 GDEVGVEEGH YCWYGGEMVA TRRVRTWVCC ADRPGLMSEL GRAVRSVNAR PVRAEIATVG 780 GRTRSVLELN VGGQQAAADG ESTSSRQALQ AALRAVLLSR EEVLAAECYK RQRFSAHLAK 840 V

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MDPSAGATRR RAEQCLSVAE KLLVARDLEG CKEFSSQALA TDPDTPGAED LHAAASVLLA  60
AERRRLANGT PDPYAVLGLD PANPSSRHPD AIHAHYRRLS FLLNRSRSDS PFSFAFTNAA  120
QIISDALRFF SNPALKSALD ADLDAAAAAA EAAWAYQAPA GHRPQSQSPI PARHNPPFAT  180
PSPRPTPPPA RSPAAASPRQ TPPPAVPSTR PTPARASLAP WQTPPRASLA PWQTPPPASP  240
SPWPTPPAAS PPRPQLPPAA STPRPAPPQA ISPPRPTPLR DGPKTWPTPP APSPQLPVAP  300
MVPPVASGTP PSSTFWTVCT ACRHIHQYDR LYERRKLLCP SCRQPFEAEA MAEPPPIVPG  360
TDMYYCTWGF FPVGFPGCPG FERLVNSQLQ GPDKMNAPWL RGSAGDAGVK GNAGDAGVKG  420
NAENGVPVSA AAEIPVEVPA TILAAKPMRV KVGAKKRGRP KDPSSAASKS KGRDPTTSSS  480
IQRLRGCFLS ATDAIDACTT PYFRHAIDGR QHRSSQRGRA LLATFRARPE RCNGIEDSGG  540
RVSPYAVVSL SLSHPQSLEM GERCPDPGKA KMTGPVSPDD HRTRKRRRQT DGDHKQLFFS  600
RPDRAADRYA NTAAAPPGRV ALSSTRRMVP FQSEEAEAAL DGECSAPAKT RSGPSRNHSE  660
AERKRRQRIN AHLATLRTLL PAASRMDKAA LLGEVVRHVR ELRGEADAAA AGAAVAVPGE  720
GDEVGVEEGH YCWYGGEMVA TRRVRTWVCC ADRPGLMSEL GRAVRSVNAR PVRAEIATVG  780
GRTRSVLELN VGGQQAAADG ESTSSRQALQ AALRAVLLSR EEVLAAECYK RQRFSAHLAK  840
V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	583	587	RKRRR
2	661	666	ERKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001130623.1	1e-151	uncharacterized protein LOC100191722
TrEMBL	A0A3L6E3L0	1e-150	A0A3L6E3L0_MAIZE; Uncharacterized protein
TrEMBL	B4F9X5	1e-150	B4F9X5_MAIZE; Chaperone DnaJ-domain superfamily protein
STRING	GRMZM2G145152_P01	1e-150	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4114	35	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	5e-20	bHLH family protein