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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00018.1.g02880.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 624aa MW: 68387.7 Da PI: 8.1423 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 38 | 91 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k Zjn_sc00018.1.g02880.1.am.mk 38 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 91 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.9 | 5.1e-42 | 37 | 129 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrls eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L+ Zjn_sc00018.1.g02880.1.am.mk 37 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRLDHDALR 117 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreelke 93 +++++L +e+ke Zjn_sc00018.1.g02880.1.am.mk 118 RDKDALLAEIKE 129 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-19 | 32 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-18 | 36 | 97 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.6E-16 | 38 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.65E-16 | 38 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 40 | 100 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.8E-5 | 64 | 73 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-5 | 73 | 89 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-16 | 93 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MEAVLLPYGD DGYGGVGMEA EGDAEEEMMA CGGGGGEKKR RLSVEQVRAL ERSFEVENKL 60 EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDYA ALRHSYDALR LDHDALRRDK 120 DALLAEIKEL KAKLGDEETT ASFTSVKAEP AAFDEPPTAG TGSSESDSSA VLNDADPAGA 180 TPPTELPPGP EIQQGTLLGS ATAAVAGTAA ARQAELLFHG SFLKVEEDDT GFLDDDEPCG 240 GFFAVEQPPP MTVKIEECRR RAEQRPPDRS LSGRCPWGRG HVKRRHWPPI DVPGLPVTPM 300 PRRERAWPCA RVVASAKAWW LLWSIRASSA LYLNERVDHG LKVSPFFSTS PSGDHARITN 360 ERVDHGLKVS PFFSTSPSGD HARITLTKAQ PMDPTLTSSQ GTETINAAAI RSFARKQEED 420 WSLEVAAPKV QEARCNCGGD CTASDDHFPS GPAWVARVNS QPHATSSSRT PLHRVAARFE 480 FEGQERFNEC CGSGRPLVQG PWSARGSHRP AQACVKLSSA PSNPFPPCTR GQPASRVRLL 540 RMWATRDSTI RAARARRQPE PGTRDRSGTV ACTVTFEFIY VVTGQHPPPP AASFDKRSST 600 LAWHSSLSIG STRIGEWLRV RARA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 68 | ERKARLA |
2 | 85 | 93 | RRARWKTKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034257 | 1e-172 | BT034257.1 Zea mays full-length cDNA clone ZM_BFc0009H14 mRNA, complete cds. | |||
GenBank | BT039062 | 1e-172 | BT039062.1 Zea mays full-length cDNA clone ZM_BFb0367N11 mRNA, complete cds. | |||
GenBank | BT055374 | 1e-172 | BT055374.1 Zea mays full-length cDNA clone ZM_BFb0091J03 mRNA, complete cds. | |||
GenBank | EU948246 | 1e-172 | EU948246.1 Zea mays clone 371798 mRNA sequence. | |||
GenBank | JX469929 | 1e-172 | JX469929.1 Zea mays subsp. mays clone UT3187 HB-type transcription factor mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 3e-42 | homeobox protein 16 |