PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g02880.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 624aa    MW: 68387.7 Da    PI: 8.1423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g02880.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-183891356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  k+++++ eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Zjn_sc00018.1.g02880.1.am.mk 38 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 91
                                  456899***********************************************9 PP
2HD-ZIP_I/II130.95.1e-4237129193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L+
  Zjn_sc00018.1.g02880.1.am.mk  37 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRLDHDALR 117
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L +e+ke
  Zjn_sc00018.1.g02880.1.am.mk 118 RDKDALLAEIKE 129
                                   *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-193295IPR009057Homeodomain-like
PROSITE profilePS5007117.2973393IPR001356Homeobox domain
SMARTSM003892.1E-183697IPR001356Homeobox domain
PfamPF000469.6E-163891IPR001356Homeobox domain
CDDcd000864.65E-163894No hitNo description
Gene3DG3DSA:1.10.10.604.6E-1940100IPR009057Homeodomain-like
PRINTSPR000313.8E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000313.8E-57389IPR000047Helix-turn-helix motif
PfamPF021831.3E-1693134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEAVLLPYGD DGYGGVGMEA EGDAEEEMMA CGGGGGEKKR RLSVEQVRAL ERSFEVENKL  60
EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDYA ALRHSYDALR LDHDALRRDK  120
DALLAEIKEL KAKLGDEETT ASFTSVKAEP AAFDEPPTAG TGSSESDSSA VLNDADPAGA  180
TPPTELPPGP EIQQGTLLGS ATAAVAGTAA ARQAELLFHG SFLKVEEDDT GFLDDDEPCG  240
GFFAVEQPPP MTVKIEECRR RAEQRPPDRS LSGRCPWGRG HVKRRHWPPI DVPGLPVTPM  300
PRRERAWPCA RVVASAKAWW LLWSIRASSA LYLNERVDHG LKVSPFFSTS PSGDHARITN  360
ERVDHGLKVS PFFSTSPSGD HARITLTKAQ PMDPTLTSSQ GTETINAAAI RSFARKQEED  420
WSLEVAAPKV QEARCNCGGD CTASDDHFPS GPAWVARVNS QPHATSSSRT PLHRVAARFE  480
FEGQERFNEC CGSGRPLVQG PWSARGSHRP AQACVKLSSA PSNPFPPCTR GQPASRVRLL  540
RMWATRDSTI RAARARRQPE PGTRDRSGTV ACTVTFEFIY VVTGQHPPPP AASFDKRSST  600
LAWHSSLSIG STRIGEWLRV RARA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268ERKARLA
28593RRARWKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342571e-172BT034257.1 Zea mays full-length cDNA clone ZM_BFc0009H14 mRNA, complete cds.
GenBankBT0390621e-172BT039062.1 Zea mays full-length cDNA clone ZM_BFb0367N11 mRNA, complete cds.
GenBankBT0553741e-172BT055374.1 Zea mays full-length cDNA clone ZM_BFb0091J03 mRNA, complete cds.
GenBankEU9482461e-172EU948246.1 Zea mays clone 371798 mRNA sequence.
GenBankJX4699291e-172JX469929.1 Zea mays subsp. mays clone UT3187 HB-type transcription factor mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-42homeobox protein 16