PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g02690.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 291aa    MW: 31531.7 Da    PI: 8.8362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g02690.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.9e-1856105255
                                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     r +h++ E+rRR++iN++f+ LrellP+     ++K +Ka+ L +++eYI+ Lq
  Zjn_sc00018.1.g02690.1.sm.mkhc  56 RSKHSATEQRRRSKINDRFQILRELLPHG----DQKRDKATFLLEVIEYIRFLQ 105
                                     889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-2451125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1952122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.73654104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-1656109No hitNo description
PfamPF000103.4E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDSSSRSSGG AGFDDDDGLA ARREVSSSLK ELTVRVDGKG GSCSDGGMDQ RPNTPRSKHS  60
ATEQRRRSKI NDRFQILREL LPHGDQKRDK ATFLLEVIEY IRFLQEKVQK YEATFPEWNQ  120
ENAKILPWSK GQIPGDAVPD PSQVMRNGSS PGFNVTGKLD NHNTVTSASG PQDQAETYRM  180
TSMSNRSAET PTNITNNASS QCQPQRTGPS PVDNCAMNSD MLNNQELAID EGTISINLGK  240
RAVKRPAAGV SSKSTETQPS SNNKTGHQHM TLGGGVEAPS HATKRQKSGG S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0971961e-117FP097196.1 Phyllostachys edulis cDNA clone: bphylf049e04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801928.11e-147transcription factor BIM2-like isoform X8
TrEMBLA0A1W0W5N31e-147A0A1W0W5N3_SORBI; Uncharacterized protein
TrEMBLA0A2S3H0H71e-147A0A2S3H0H7_9POAL; Uncharacterized protein
STRINGSb02g027460.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-42BES1-interacting Myc-like protein 2