PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g01910.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 333aa    MW: 35018.9 Da    PI: 8.1085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g01910.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13262307655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Zjn_sc00018.1.g01910.1.am.mk 262 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 307
                                   689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-16259316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-13260311No hitNo description
Gene3DG3DSA:4.10.280.105.1E-15261317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10262307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-13262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MYGSAVSKDL NELPDVQPQP AAAPQMSAPG LLRYRSAPSN LLGELCAAGF HAAGGGAAGH  60
HHRTDHAADA ALTRFHAGNH DDSSSPAGFL NHLNMDNGYG NMFRVGGMAA GEFRNGGDAR  120
LKGQLSYSSR QGSVMSQISE MGSEELGGGS PEAGSNGGTA ARSYSGIIPA AGGYPMDGGW  180
DDACAAPDHN HLSGAKRSRD PAHAPPVSNG HHLAPQLSLP GGAGGNGKTS ADMAAIEKFL  240
HFQDAVPCKI RAKRGCATHP RSIAERVRRT RISERIRKLQ ELVPNMEKQT NTADMLDLAV  300
DYIKDLQKQV KGLNDDRANC TCSAGKRQNQ FTC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768151e-104EU976815.1 Zea mays clone 990854 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151233.11e-118uncharacterized protein LOC100284866
TrEMBLA0A0A9VBR81e-119A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGGRMZM2G085467_P021e-118(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-42bHLH family protein