PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g01040.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 187aa MW: 21237 Da PI: 9.4196

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g01040.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.7	2.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCd eva+iifs++gkl+e++s Zjn_sc00018.1.g01040.1.sm.mk 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDSEVALIIFSNRGKLFEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.436	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.57E-44	2	77	No hit	No description
SuperFamily	SSF55455	4.84E-32	2	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD SEVALIIFSN RGKLFEFCSG 60 QSMTKSLERY QKSSYGGPDT AVQNKENELV QSSRNEYLKL KARTQHILDQ LTDLQRKFEE 120 TNQVQGVQVA WQHGANLVGY ESQSPQQAPP HAGNGFFHPL VDAAAEPTLQ IGFAHEQMNN 180 FMPTWLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-20	1	86	1	83	MEF2 CHIMERA
6byy_B	1e-20	1	86	1	83	MEF2 CHIMERA
6byy_C	1e-20	1	86	1	83	MEF2 CHIMERA
6byy_D	1e-20	1	86	1	83	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:9339904, ECO:0000269\|Ref.9}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ002717	1e-102	KJ002717.1 Phyllostachys edulis MADS-box protein 8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803091.1	1e-104	MADS-box transcription factor 8 isoform X2
Swissprot	Q9SAR1	1e-102	MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBL	A0A2S3H118	1e-102	A0A2S3H118_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EUE6	1e-102	A0A2T7EUE6_9POAL; Uncharacterized protein
STRING	Si030960m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3483	34	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	5e-58	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Jang YH, et al. Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY. Plant Cell Physiol., 2009. 50(8): p. 1479-92 [PMID:19561057] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]