PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g02780.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 265aa    MW: 28861.8 Da    PI: 6.8842
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g02780.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.91.4e-121211552256
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   n+ +  +++ +LA++l+L  rqV vWFqNrRa+ k
  Zjn_sc00017.1.g02780.1.am.mk 121 NSEVGGNQKSDLARRLNLRPRQVEVWFQNRRARTK 155
                                   667778899************************98 PP
2HD-ZIP_I/II84.61.4e-271201902091
                   HD-ZIP_I/II  20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                                   e++++  ++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d e+Lkr + +l++en+rL++ev+eLr +l
  Zjn_sc00017.1.g02780.1.am.mk 120 ENSEVGGNQKSDLARRLNLRPRQVEVWFQNRRARTKLKQTEVDREYLKRFCATLSQENRRLQREVAELR-AL 190
                                   45578889************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.9E-490161IPR001356Homeobox domain
CDDcd000866.56E-8119158No hitNo description
Gene3DG3DSA:1.10.10.604.6E-11120155IPR009057Homeodomain-like
PfamPF000464.9E-10121155IPR001356Homeobox domain
SuperFamilySSF466894.08E-10124165IPR009057Homeodomain-like
PROSITE profilePS5007112.325128157IPR001356Homeobox domain
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PfamPF021838.1E-7157190IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.6E-19157200IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MELELRLGNS SAPGKDTSTT VLTSAHGGNG EGHEIALELG TGTAKRAEQD NQKTHTGLEE  60
DDEARSQRSL NSEVSVRGFD VNSVLVDEDA ANLRSLPTSS LQVEIPLHQA VNHEVAEDEE  120
NSEVGGNQKS DLARRLNLRP RQVEVWFQNR RARTKLKQTE VDREYLKRFC ATLSQENRRL  180
QREVAELRAL RTTYPIYGQP VGFSATRGCP SCGNKASPYS VVSTVSSSSV APPSSASSVS  240
SLFAGPYSGP FTVHPVLRRH SSATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.11e-93homeobox-leucine zipper protein HOX7
SwissprotA2X6741e-49HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A3L6QJX59e-98A0A3L6QJX5_PANMI; Homeobox-leucine zipper protein HOX7-like
TrEMBLA0A3L6RNY47e-98A0A3L6RNY4_PANMI; Homeobox-leucine zipper protein HOX7-like
STRINGSb04g023410.13e-89(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-35homeobox from Arabidopsis thaliana