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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00016.1.g05280.1.am.mk |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
Trihelix |
Protein Properties |
Length: 324aa MW: 36616.8 Da PI: 6.2127 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00016.1.g05280.1.am.mk | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 70.6 | 2.9e-22 | 55 | 126 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
+W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + +
Zjn_sc00016.1.g05280.1.am.mk 55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASAA 126
7***************************************************************99888764 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAAEPPPQ PLPSSSSLER ERLPQWSHAE 60 TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA 120 AAASAAQPAE HDPGATAARQ FPFHDEMRRI FDARAERARA LESKKAKGKD VRPEDNEGGG 180 GGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTPS ADQGEVEAML 240 REFMRRQLEM EERWMEAAEA REAERRQREE EWRTAMVALG EERLALVRRW REREDAWRAR 300 AEEREERRHQ LVAALLAKLG GDAS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC130598 | 1e-102 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. |
GenBank | AP014961 | 1e-102 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
GenBank | CP012613 | 1e-102 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
GenBank | CT836356 | 1e-102 | CT836356.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051H02, full insert sequence. |