PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g04730.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1099aa MW: 116743 Da PI: 10.077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g04730.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.8	6.3e-16	563	609	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Zjn_sc00016.1.g04730.1.am.mk 563 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 609 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.6E-20	556	618	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.02E-17	556	613	No hit	No description
SuperFamily	SSF47459	6.02E-20	557	619	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.006	559	608	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-13	563	609	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-17	565	614	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence Send to blast
MATTNAGQDR TGSRRTSELA RAPTGQDAPP VGVRWPGERQ RAREGAGNQR SASRHGGGGW 60 TYGTGANQKP GSTGSRIWRG SNACASRDAR GRLDFAGRPV GAGRPLSPRA GIHAGRCRRR 120 DTFSAGSLTN EFLAPLTSPC NRNTNGWVFP TCPPLPADPS QWRHLLGFLG LGWWRVALNN 180 SPRPLPLLVS ILNLHTPNAT VPAPAPTAVL SRRAAPSPVT HLSPRQPPSR RCAVSPLVTR 240 RNRPGDELAE LLWDSNCPAL RTTPHFPAAA PFQPFTCSAA GSSRANELLN KRHAVGAMDD 300 DVAGLGGIPA VHHDHDHDAV PWLHCPVIDD GDSDTAPLPP EYCAGLLSPG YPGLHALPDP 360 TPTVSDIARS SSTGGAVVVP ATRAVTPEAA PAQPQPGAAG EGVMNFTFFS RPLQRLQPSA 420 AAAPPPSNLL ESTTAAQTAA SRLRNTPLFS EQRMAWLQPP KGPPRATAGA PPATDRHHHA 480 EAAATVTQNR MQQPPDARPP DTTAAVTTSS VCSGNGDRSH DKRSSHHPTA ECSVSPDEDM 540 DDEPGAVGRP TTRGTKRSRT AEVHNLSERR RRDRINEKMR ALQELIPNCN KIDKASMLEE 600 AIEYLKTLQL QVQLMSMGTG LCVPAAPMLM QMQMPLVAPP FPHLGMGLGF GAVGFDVLPR 660 FAAAQFPCPV MPPGAVFGMP GQIVPSPLAP FAHVNGAATV EHREAAAAAA PAPPGGGAAA 720 GDRQPSVPVP LQATIDQNHH FFSGRPEAAA PEADVTADDA AYPRAVADRM HPWSCAAEFG 780 LAAREAGVDL GSESLAAVSM RRYAESLLQG VASRVREQAL RVQLSAYQLK GPVRHASVDA 840 RGVAKTTSMD TRRFPFLRVT VHACADAEQA SKAELILILK PCVRLGREQR IWVLVAVASQ 900 ALGRRSRTSA SVQIHGLATP RSLLPCRSQQ QLFSLCSAPP PTGAGRSRGG GTGRRATLRG 960 GKESGIGPTV SVGLLRQPML KMSGPQCDSA HETPSRTGVM FTLGLFLSGI DHDRISSLYS 1020 YLTVAVSESL SQSSSHVCLK HITTWEQYNK IKVASSSSSE ANDEWPSRKG ARLSRRGSFR 1080 AKGKGRQQWP APEVDPEPS

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence Send to blast

MATTNAGQDR TGSRRTSELA RAPTGQDAPP VGVRWPGERQ RAREGAGNQR SASRHGGGGW  60
TYGTGANQKP GSTGSRIWRG SNACASRDAR GRLDFAGRPV GAGRPLSPRA GIHAGRCRRR  120
DTFSAGSLTN EFLAPLTSPC NRNTNGWVFP TCPPLPADPS QWRHLLGFLG LGWWRVALNN  180
SPRPLPLLVS ILNLHTPNAT VPAPAPTAVL SRRAAPSPVT HLSPRQPPSR RCAVSPLVTR  240
RNRPGDELAE LLWDSNCPAL RTTPHFPAAA PFQPFTCSAA GSSRANELLN KRHAVGAMDD  300
DVAGLGGIPA VHHDHDHDAV PWLHCPVIDD GDSDTAPLPP EYCAGLLSPG YPGLHALPDP  360
TPTVSDIARS SSTGGAVVVP ATRAVTPEAA PAQPQPGAAG EGVMNFTFFS RPLQRLQPSA  420
AAAPPPSNLL ESTTAAQTAA SRLRNTPLFS EQRMAWLQPP KGPPRATAGA PPATDRHHHA  480
EAAATVTQNR MQQPPDARPP DTTAAVTTSS VCSGNGDRSH DKRSSHHPTA ECSVSPDEDM  540
DDEPGAVGRP TTRGTKRSRT AEVHNLSERR RRDRINEKMR ALQELIPNCN KIDKASMLEE  600
AIEYLKTLQL QVQLMSMGTG LCVPAAPMLM QMQMPLVAPP FPHLGMGLGF GAVGFDVLPR  660
FAAAQFPCPV MPPGAVFGMP GQIVPSPLAP FAHVNGAATV EHREAAAAAA PAPPGGGAAA  720
GDRQPSVPVP LQATIDQNHH FFSGRPEAAA PEADVTADDA AYPRAVADRM HPWSCAAEFG  780
LAAREAGVDL GSESLAAVSM RRYAESLLQG VASRVREQAL RVQLSAYQLK GPVRHASVDA  840
RGVAKTTSMD TRRFPFLRVT VHACADAEQA SKAELILILK PCVRLGREQR IWVLVAVASQ  900
ALGRRSRTSA SVQIHGLATP RSLLPCRSQQ QLFSLCSAPP PTGAGRSRGG GTGRRATLRG  960
GKESGIGPTV SVGLLRQPML KMSGPQCDSA HETPSRTGVM FTLGLFLSGI DHDRISSLYS  1020
YLTVAVSESL SQSSSHVCLK HITTWEQYNK IKVASSSSSE ANDEWPSRKG ARLSRRGSFR  1080
AKGKGRQQWP APEVDPEPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	567	572	ERRRRD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB667900	1e-57	AB667900.1 Oryza sativa Japonica Group APG mRNA for basic helix-loop-helix protein APG, complete cds.
GenBank	AK287958	1e-57	AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	8e-33	phytochrome interacting factor 3