PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g03930.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 512aa MW: 54649.2 Da PI: 9.0061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g03930.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	206	248	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrR + + ++e Lr+l+P++ ++ + L A YI Lq Zjn_sc00016.1.g03930.1.am.mk 206 RRRDAAVTRRMEALRRLVPTS---DGDQDDELLLLSAAAGYIARLQ 248 777788999*********9...9999************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.6E-6	206	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-8	206	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MDMKRINMIP PETTTTPTVL LRNCANSRVP NLRSNQTRGA AMNGHASIEQ IACLPAGDDM 60 PTHETWNIVV VVVVGVDTGC CDEEMNPKAW REGRGPSQLV EPCIYINAIP CCLLPSPSSH 120 THTRCNGLSP RLLVTISLQS ATTIYKADSI VAMGAHTGRR RCSASSASMR ARLPVASAVP 180 SRRLPSSYRT TSTKASGGDG KVRSSRRRDA AVTRRMEALR RLVPTSDGDQ DDELLLLSAA 240 AGYIARLQAQ VRVMQLMANV LEHAQEAPQV PARSRERRGV TSKNPAEILP PSLSPEFVKP 300 LRYKPKSPNQ SRKADDKWPP DDPFKQSTEN SISLSCGALT VAAAVASMAG VGAADKNAAA 360 AVADELAGGL DASLSAFFDH AGLESAVAEG GEGAEEEEEE LEWLSNMDAF PSVDTMAVEA 420 EAAPSSSRPL VGLGRLPHVV GPRTKGLRRR RRVTAPWNLP PLQPPPPPPA TRPPLPPAVG 480 PGPAAPSAPR RAPPPPRLSD GTVAVDRWLR SY

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MDMKRINMIP PETTTTPTVL LRNCANSRVP NLRSNQTRGA AMNGHASIEQ IACLPAGDDM  60
PTHETWNIVV VVVVGVDTGC CDEEMNPKAW REGRGPSQLV EPCIYINAIP CCLLPSPSSH  120
THTRCNGLSP RLLVTISLQS ATTIYKADSI VAMGAHTGRR RCSASSASMR ARLPVASAVP  180
SRRLPSSYRT TSTKASGGDG KVRSSRRRDA AVTRRMEALR RLVPTSDGDQ DDELLLLSAA  240
AGYIARLQAQ VRVMQLMANV LEHAQEAPQV PARSRERRGV TSKNPAEILP PSLSPEFVKP  300
LRYKPKSPNQ SRKADDKWPP DDPFKQSTEN SISLSCGALT VAAAVASMAG VGAADKNAAA  360
AVADELAGGL DASLSAFFDH AGLESAVAEG GEGAEEEEEE LEWLSNMDAF PSVDTMAVEA  420
EAAPSSSRPL VGLGRLPHVV GPRTKGLRRR RRVTAPWNLP PLQPPPPPPA TRPPLPPAVG  480
PGPAAPSAPR RAPPPPRLSD GTVAVDRWLR SY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26