PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g01150.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 236aa    MW: 24527.8 Da    PI: 9.8383
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g01150.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.4e-221764249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  rie++  rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + +
  Zjn_sc00016.1.g01150.1.sm.mk 17 RIESDEARQVCFSKRRAGLFKKASELSTLCGADVAAVVFSPAGKAFSF 64
                                  8******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.876868IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-33867IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-28980IPR002100Transcription factor, MADS-box
CDDcd002657.41E-40980No hitNo description
PRINTSPR004041.1E-191030IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0009960Biological Processendosperm development
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAPRRPSLGR QKIEIRRIES DEARQVCFSK RRAGLFKKAS ELSTLCGADV AAVVFSPAGK  60
AFSFGHPSVE SILERFLAAS PSCSPSTGGP GGAGSGLSSA GDRAVTELNR QYGELRAMLD  120
AEKARQERAD EAARKERAAG SPVMAWIDAD PAALGQADLA AFSAALAAVR NAVKATADQM  180
LRDAFFVGRR GRPMAQLAGG AFDMSAFGVG APFPPGFVVP GGETQGFGHA ILGPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626544e-88EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825087.11e-106agamous-like MADS-box protein AGL29
TrEMBLA0A1E5VA381e-105A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61
STRINGPavir.J11717.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-29AGAMOUS-like 61