PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g08330.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 267aa    MW: 29184 Da    PI: 8.4233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g08330.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1979129155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  Zjn_sc00015.1.g08330.1.am.mk  79 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 129
                                   679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.7E-3180143IPR001471AP2/ERF domain
PROSITE profilePS5103220.82480137IPR001471AP2/ERF domain
PRINTSPR003671.5E-98192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2881137IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2081137IPR016177DNA-binding domain
PfamPF008476.8E-1381129IPR001471AP2/ERF domain
CDDcd000181.93E-1681139No hitNo description
PRINTSPR003671.5E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPGAGISSAF LPPPRQLSIS PSSRLSRLRS SVRPPQVTTR VMDRSQQQHQ KSTGRKCCPL  60
RRSRKGCMKG KGGPENQQCP FRGVRQRTWG KWVAEIREPN RGARLWLGTF ATALEAARAY  120
DAAARALYGD CARLNLATTA SLVAAGRSMT TSCCSADDSA ASSSVASQLK DAVVLVPGER  180
QCLMTQQDAA AGGMDHTVVR SRTRTDQLLQ DDDDEDFEQF VTRLPKAEDF GLEGFPPEVF  240
DDDATAGICW PDHTCWPAEM VQLVPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14771361171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9414351e-85EU941435.1 Zea mays clone 1451684 mRNA sequence.
GenBankEU9764781e-85EU976478.1 Zea mays clone 895667 mRNA sequence.
GenBankKJ7276751e-85KJ727675.1 Zea mays clone pUT5602 AP2-EREBP transcription factor (EREB89) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.11e-66dehydration-responsive element-binding protein 2C
SwissprotQ84ZA12e-67DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY935e-65A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-019e-66(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.14e-28ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]