PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00015.1.g08200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 116aa MW: 13162.4 Da PI: 6.538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.2e-21 | 10 | 62 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd +++r++lg+f+taeeAa+a+++a+ +++g+ Zjn_sc00015.1.g08200.1.sm.mk 10 TKYRGVRRRP-SGKFAAEIRDS---SrQSARVWLGTFDTAEEAARAYDRAAYAMRGH 62 69********.7*********3...2236**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.15E-18 | 10 | 69 | No hit | No description |
Pfam | PF00847 | 5.6E-17 | 10 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 11 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-32 | 11 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.972 | 11 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 11 | 69 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MDDDQGKDDT KYRGVRRRPS GKFAAEIRDS SRQSARVWLG TFDTAEEAAR AYDRAAYAMR 60 GHLAMLNFPG EAHNYVRGSS SSSSRQQQQQ QQVIELEYLD DQVLQEMLKG DDGSKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-33 | 6 | 103 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN672670 | 3e-87 | JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193660.1 | 9e-54 | ethylene-responsive transcription factor 14-like | ||||
Swissprot | Q9LTC5 | 1e-36 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2T7DAY5 | 2e-55 | A0A2T7DAY5_9POAL; Uncharacterized protein | ||||
STRING | EMT06920 | 9e-53 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 3e-25 | Ethylene-responsive element binding factor 14 |
Publications ? help Back to Top | |||
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