PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g08110.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 474aa    MW: 52481.3 Da    PI: 5.3736
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g08110.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-53681961129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknra 77 
                                     l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp  +++++++++wyfFs+ d+k+a+  r+nra
  Zjn_sc00015.1.g08110.1.am.mkhc  68 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKIEPWDLPgrSRLRSRDSQWYFFSRLDRKHANRARTNRA 145
                                     579***************************.99***************6448888999********************* PP

                             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     t+ gyWk+tgkd+ev + + ++vg+kktLvf+ grapkg++t+Wvmheyrle
  Zjn_sc00015.1.g08110.1.am.mkhc 146 TNGGYWKTTGKDREVRN-GPRVVGMKKTLVFHAGRAPKGQRTNWVMHEYRLE 196
                                     ****************9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6263213IPR003441NAC domain
PROSITE profilePS5100559.56768213IPR003441NAC domain
PfamPF023659.6E-2970195IPR003441NAC domain
PROSITE patternPS000180277289IPR018247EF-Hand 1, calcium-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MPLAFLMAQA TTTAPSLLPR HKTFPNPTNP VQPYQRRRRC WPMTLPSSSS SSALPLPAPA  60
GAAEATSLAP GFRFHPTDEE LVSYYLKRKV LGRPLKVDAI AEVDLYKIEP WDLPGRSRLR  120
SRDSQWYFFS RLDRKHANRA RTNRATNGGY WKTTGKDREV RNGPRVVGMK KTLVFHAGRA  180
PKGQRTNWVM HEYRLEGDEI PQDSFVVCRI FQKAGPGPQN GAQYGAPFVE EEWEEEEEDE  240
DVGLLPVEVD AVAEPQPLGA MEKGYLQMSD LTQGLGDQNG NGTIELKDFI DSANPEYPLG  300
DDSTICADSF EAINGANNEI PPLPDDQTFE SDELEQLLQS IQEDSHGKAK SGIVGQKFIK  360
ILDSISSPPA FAAESPSNLH KTIAPISGAR PNTFHVSAEV ISIGSLAVSS RPDKWAVQKD  420
QGMELLLTSF EPESRMHCGC NTITAVLRGG FCMFFFSAIM LLVSYEVGLY IYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-46622139168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0881971e-162BT088197.2 Zea mays full-length cDNA clone ZM_BFc0057H24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444576.11e-131NAC domain-containing protein 53
TrEMBLA0A1Z5RAV31e-130A0A1Z5RAV3_SORBI; Uncharacterized protein
STRINGSb07g023900.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-81NAC domain containing protein 2