PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g06530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 557aa    MW: 60364.4 Da    PI: 8.5584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g06530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.7e-31219269151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Zjn_sc00015.1.g06530.1.am.mk 219 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 269
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-41211270IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.277211271IPR002100Transcription factor, MADS-box
CDDcd002652.02E-39212270No hitNo description
SuperFamilySSF554554.84E-29212275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500213267IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-32213233IPR002100Transcription factor, MADS-box
PfamPF003191.2E-25220267IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-32233248IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-32248269IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MNDRDGTVRE PRPDGQRLGG ARVVAIKGWH VCAPASTQHQ PPSPAAWVRA SGATGGVKQS  60
TGAEKAIDGA HARRERRPIT IPPSLPETGY GGPRLGFPPS LCFAGNGNLI SGPLAPTGCF  120
AERARSLTSA QLLPPVHEMS PTTITTTVLL VEACLQLPSL SSSLLALLLS CLGCLLGESD  180
LAAEEEGSWG GKGKQQQQEE APPPPPPATA MGRGRVELKR IENKINRQVT FAKRRNGLLK  240
KAYELSVLCD AEVALIIFST RGKLYEFCST QRSARPAIGE DEKQVAFLEY WLMDPELGFG  300
GVPGRDPGDT FGFRLEESNQ VLWQQAWEHG ERQPEVQPPQ PQLHGGNGFF HPLDAAGETT  360
LQIGYLRRFV AVLHLPTRGG IFEGLRDRPT KWGLRASAED KPRRKKHQDL ERSGAYDRTE  420
VQHLPMHPVR FKSCSGLAVE MSEGRKPPCA PSATFSLPEI STQAPSHPSA VHGHGGEKKE  480
SSSKVWEDLV DSHQRGPMPD NTGAAGRGFP MIRPSIQEPY RTPQIAPERV RGAPSGEQPW  540
IWPRGAPTAA STVPQAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18211270160MEF2C
5f28_B2e-18211270160MEF2C
5f28_C2e-18211270160MEF2C
5f28_D2e-18211270160MEF2C
6byy_A1e-18211270160MEF2 CHIMERA
6byy_B1e-18211270160MEF2 CHIMERA
6byy_C1e-18211270160MEF2 CHIMERA
6byy_D1e-18211270160MEF2 CHIMERA
6bz1_A1e-18211270160MEF2 CHIMERA
6bz1_B1e-18211270160MEF2 CHIMERA
6bz1_C1e-18211270160MEF2 CHIMERA
6bz1_D1e-18211270160MEF2 CHIMERA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306928e-82AJ430692.1 Zea mays mRNA for putative MADS-domain transcription factor (m6 gene).
GenBankBT0333608e-82BT033360.1 Zea mays full-length cDNA clone ZM_BFb0092L03 mRNA, complete cds.
GenBankBT0426058e-82BT042605.1 Zea mays full-length cDNA clone ZM_BFb0367C04 mRNA, complete cds.
GenBankEU9598678e-82EU959867.1 Zea mays clone 220179 SRF-type transcription factor family protein mRNA, complete cds.
GenBankEU9607118e-82EU960711.1 Zea mays clone 227805 SRF-type transcription factor family protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2814435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-34MIKC_MADS family protein