PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g05540.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 328aa MW: 35814.9 Da PI: 7.1444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g05540.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.1	2.8e-52	26	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL++kv + + i+evd++++ePw+Lp++++ +e+ewyfFs rd+ky+tg r+nrat +g Zjn_sc00015.1.g05540.1.sm.mk 26 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDLNRCEPWELPEAARMGEREWYFFSLRDRKYPTGLRTNRATGAG 105 79**********************9777.34***********9888999********************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev+++ g l+g+kktLvfykgrap+gekt+Wv+heyrl Zjn_sc00015.1.g05540.1.sm.mk 106 YWKATGKDREVVNAaIGVLIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 153 ********9867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-61	24	176	IPR003441	NAC domain
PROSITE profile	PS51005	58.324	26	176	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	27	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAMTDHQALA MGDALWDILG EQAGGLPPGF RFHPTDEELV TFYLAAKVFN GACCGVDIAE 60 VDLNRCEPWE LPEAARMGER EWYFFSLRDR KYPTGLRTNR ATGAGYWKAT GKDREVVNAA 120 IGVLIGMKKT LVFYKGRAPR GEKTKWVLHE YRLDGDLAAG RRSCKEEWVI CRVFHKAVDP 180 YSKMVMVKSP YFDHTMDPAS FCFLQQEPPH AALPLPNPSS CSGLAHALPF HHGLDNHHQG 240 KTSHSNGLPP ACSLEPTGRG ADMCGSATVP MLPPFPSFAS LVAGKAAPHQ QVGVNSGAPE 300 PPPPTWLDGY LPSGFLYEMG PPAAPRSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-48	26	176	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-48	26	176	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-48	26	176	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-48	26	176	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-48	26	176	20	168	NAC domain-containing protein 19
3swm_B	3e-48	26	176	20	168	NAC domain-containing protein 19
3swm_C	3e-48	26	176	20	168	NAC domain-containing protein 19
3swm_D	3e-48	26	176	20	168	NAC domain-containing protein 19
3swp_A	3e-48	26	176	20	168	NAC domain-containing protein 19
3swp_B	3e-48	26	176	20	168	NAC domain-containing protein 19
3swp_C	3e-48	26	176	20	168	NAC domain-containing protein 19
3swp_D	3e-48	26	176	20	168	NAC domain-containing protein 19
4dul_A	3e-48	26	176	17	165	NAC domain-containing protein 19
4dul_B	3e-48	26	176	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974840.1	1e-143	NAC domain-containing protein 92
Refseq	XP_008663651.1	1e-143	protein CUP-SHAPED COTYLEDON 1 isoform X2
Swissprot	Q9S851	2e-88	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	C0HG14	1e-143	C0HG14_MAIZE; Protein CUP-SHAPED COTYLEDON 3
STRING	Pavir.Fb01938.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11237	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	8e-91	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]