PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g05320.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 382aa    MW: 40889.7 Da    PI: 8.4708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g05320.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13312357655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Zjn_sc00015.1.g05320.1.sm.mkhc 312 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 357
                                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-13310361No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15311372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-10312357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STTLGELCED FLPTGPRTGS PDAGTDNVFS  60
RFLADHQIRD KPPAPPVPAA AHFPNEAAMA SQQQQMMFHS QQQQQQQQMS AVESGLYRTV  120
SSGMEGANAA GAGVSNLIRQ SSSPAGFLNH LSTDNGYTTM LRAGVGVGVG FRNDSSAAAA  180
DSPAAGAGGS RLKGQLSFSS RQGSLMSQIS EMESEELGGS SPEGAGGGRG FISGYPMGSS  240
GWEDSSSLMT DNMSRMKRPR ESSEPGQNGL AHQFSLPKTS SEMASIEKFL QFQDAVPCKI  300
RAKRGCATHP RSIAERVRRT KISERIRKLQ ELVPNMDKQT NTSDMLDLAV DYIKDLQKQV  360
KVLNESRANC TCAASKHQQY SG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H3450.0A0A2S3H345_9POAL; Uncharacterized protein
STRINGPavir.Ba00676.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-60bHLH family protein