PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g05000.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 586aa    MW: 63772.4 Da    PI: 9.0696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g05000.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32190246259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g+H h+
  Zjn_sc00015.1.g05000.1.am.mkhc 190 EDGYNWRKYGQKQVKNSEYPRSYYKCTHPDCPVKKKVERSQ-DGHITEIVYNGSHSHP 246
                                     7****************************************.***************8 PP
2WRKY100.51e-31390448159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC v+k+ver+++d k v++ Yeg+Hnhe
  Zjn_sc00015.1.g05000.1.am.mkhc 390 LDDGYRWRKYGQKVVKGNTNPRSYYKCTHAGCGVRKHVERASKDLKSVITSYEGKHNHE 448
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29184248IPR003657WRKY domain
SuperFamilySSF1182906.93E-26187248IPR003657WRKY domain
SMARTSM007746.8E-36189247IPR003657WRKY domain
PfamPF031065.4E-25190246IPR003657WRKY domain
PROSITE profilePS5081122.573190248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-35375450IPR003657WRKY domain
SuperFamilySSF1182909.81E-28382450IPR003657WRKY domain
PROSITE profilePS5081135.818385450IPR003657WRKY domain
SMARTSM007747.8E-35390449IPR003657WRKY domain
PfamPF031062.4E-24391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MMSPPGAAAA LRDERSCGAG EENESGNLSP RLDLPLLYPA SRGYAAFIPR TTRPKSEGQR  60
WRVGRARLRE ACCTRRVKLS HKTENQSDRS CIRWPGRGGS TARLDKLLSS LPLPVHPRFS  120
PPHSRFHSAL PPPLLLPAAF ALCRRTRIVV VVSAPPTSDN DHPSPTDEEE ESEESQNGEH  180
SSALVTAPPE DGYNWRKYGQ KQVKNSEYPR SYYKCTHPDC PVKKKVERSQ DGHITEIVYN  240
GSHSHPSPQP NRQPSFNDLQ ADGQEDLGSK PGQDAAASLG STTNGHTHDV RCGVLETKMT  300
GYLVTTDLAN TSALESREAM DVSKDDEATR GSIPLNFDGE NADNESKRRK MDVSATTNNT  360
TSTFDVAAMA SRAVREPRII VQTTSEVDIL DDGYRWRKYG QKVVKGNTNP RSYYKCTHAG  420
CGVRKHVERA SKDLKSVITS YEGKHNHEVP AARNSRGHPS SAQEGCGNLH QMPQLAQASI  480
VQFSGVPAFG SVSLPAQLGA GSGGFCFGMF PPGMAVPVPP PGAAVPAVPM RVPRHTSAMQ  540
HYPGVMLPRG EVKVNPKEQS SLPVATRSGS ATYHQIMGRL PQGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34190451878Probable WRKY transcription factor 4
2lex_A1e-34190451878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
SwissprotO655906e-84WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A2T7D8Y40.0A0A2T7D8Y4_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.13e-84WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]