PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g04530.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 475aa MW: 51556 Da PI: 8.2264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g04530.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.2	1.3e-17	250	299	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Zjn_sc00015.1.g04530.1.sm.mkhc 250 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 299 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.6E-24	247	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-18	248	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.888	248	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.60E-17	250	303	No hit	No description
Pfam	PF00010	4.1E-15	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-13	254	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MGLQGDKATH DFLSLYSAAK DSALPLIPGS KKAPPSQGFF LKTHDFLQPL ERPSSPSQQP 60 AAEKPVDARH ALPVGVGTYS INRPTADLPG SVKQEPAAFA LWGQPEPRGH PWALPFAAAR 120 CVAVAPARPQ QQQQMPLDRK AGGGFTEAGS RSSGSGGFDD DDGHAVRREV SSSLKGDTSI 180 VLLNTSLLRG SLVPCRLGGR VVEGIDSHMG LLLALFCLFG VAELTVRVEE TKGGSCSGSA 240 GTDKLPNTPR SKHSATEQRR RSKINDRFQI LREILPQNDQ KRDKASFLLE VIEYIRFLQE 300 KVQKYEVSHQ EWNQENAKVV PWSNIYFRSF WKNAQNKDEM DGDTAPDPSQ VIKNGSSLPF 360 PFAVKPADGN NAAPFEIASA GHELAEANQK GCVPYKEADT ASNIPKNVAS QQAAHLMKSL 420 PTEDHPVNSE MLKDPELAID EGTISLSSQY SQGNSPVKQL MAKRFGTNRS RGMGL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MGLQGDKATH DFLSLYSAAK DSALPLIPGS KKAPPSQGFF LKTHDFLQPL ERPSSPSQQP  60
AAEKPVDARH ALPVGVGTYS INRPTADLPG SVKQEPAAFA LWGQPEPRGH PWALPFAAAR  120
CVAVAPARPQ QQQQMPLDRK AGGGFTEAGS RSSGSGGFDD DDGHAVRREV SSSLKGDTSI  180
VLLNTSLLRG SLVPCRLGGR VVEGIDSHMG LLLALFCLFG VAELTVRVEE TKGGSCSGSA  240
GTDKLPNTPR SKHSATEQRR RSKINDRFQI LREILPQNDQ KRDKASFLLE VIEYIRFLQE  300
KVQKYEVSHQ EWNQENAKVV PWSNIYFRSF WKNAQNKDEM DGDTAPDPSQ VIKNGSSLPF  360
PFAVKPADGN NAAPFEIASA GHELAEANQK GCVPYKEADT ASNIPKNVAS QQAAHLMKSL  420
PTEDHPVNSE MLKDPELAID EGTISLSSQY SQGNSPVKQL MAKRFGTNRS RGMGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822754.1	0.0	transcription factor BIM1-like isoform X1
TrEMBL	A0A2T7D8Q5	0.0	A0A2T7D8Q5_9POAL; Uncharacterized protein
STRING	Si013622m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	8e-36	bHLH family protein