PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g04040.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 361aa    MW: 37722.1 Da    PI: 6.9206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g04040.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13130181155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+ +P++   + ++ + a+i   A++Y+k+L+
  Zjn_sc00015.1.g04040.1.sm.mk 130 QRMSHIAVERNRRKQMNEYLAVLRSAMPPS---YVQRGDQASIIGGAINYVKELE 181
                                   79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.99E-14128185No hitNo description
Gene3DG3DSA:4.10.280.103.3E-14128185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MALEAVVSAE GLFGCWSMAA SGGGGWSWSH EHGDGVMEGP VGLEGGGSAS AAWDGGASSS  60
VLMPGVQEPA GNSAAPPLAH NGGRGGNAPA GAEFSKEGAA AATAISPVSG VRRKRRMTRS  120
AKNREEVESQ RMSHIAVERN RRKQMNEYLA VLRSAMPPSY VQRGDQASII GGAINYVKEL  180
EQLVQTLEAR KHARNNTPSS PGVDAAAATP FAGFFTFPQY SMRAAGVSPT ATNMPRPVDV  240
VDGNANDANG NDTAAGSRKS SVADIEVTMV ETHANLKVLS RRRPRQLLRV VAGLQGHRLT  300
VLHLNVTSAG PMALYSLSLK VEDDCQLSSA DDIAAAVHRI VEALEHEQKD LHDGGGELGS  360
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130141RMSHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973718.11e-112transcription factor bHLH94
SwissprotQ9C7T42e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9VPC81e-128A0A0A9VPC8_ARUDO; Uncharacterized protein
STRINGSi013925m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]